Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6M96_RS05980 Genome accession   NZ_CP146250
Coordinates   1236196..1237857 (-) Length   553 a.a.
NCBI ID   WP_000880900.1    Uniprot ID   -
Organism   Escherichia coli strain L26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1231196..1242857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M96_RS05950 (V6M96_05950) - 1232316..1233512 (-) 1197 WP_032172938.1 integrase domain-containing protein -
  V6M96_RS05960 (V6M96_05960) smpB 1234274..1234756 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  V6M96_RS05965 (V6M96_05965) ratA 1234927..1235364 (+) 438 WP_001341638.1 type II toxin-antitoxin system toxin RatA -
  V6M96_RS05970 (V6M96_05970) yfjF 1235354..1235644 (+) 291 WP_001117838.1 RnfH family protein -
  V6M96_RS05975 (V6M96_05975) bamE 1235706..1236047 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  V6M96_RS05980 (V6M96_05980) recN 1236196..1237857 (-) 1662 WP_000880900.1 DNA repair protein RecN Machinery gene
  V6M96_RS05985 (V6M96_05985) nadK 1237943..1238821 (-) 879 WP_001059169.1 NAD(+) kinase -
  V6M96_RS05990 (V6M96_05990) grpE 1238944..1239537 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  V6M96_RS05995 (V6M96_05995) yfjD 1239592..1240878 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  V6M96_RS06000 (V6M96_06000) ypjD 1240900..1241691 (-) 792 WP_053291549.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61397.43 Da        Isoelectric Point: 5.2592

>NTDB_id=855052 V6M96_RS05980 WP_000880900.1 1236196..1237857(-) (recN) [Escherichia coli strain L26]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANEISLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=855052 V6M96_RS05980 WP_000880900.1 1236196..1237857(-) (recN) [Escherichia coli strain L26]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCTCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTGATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAGTTCCTGCTTGATGGCTATGCCAATGAAATCTCTCTACTCCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCTGCCCGTGC
GGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGACGAACTGCGCCACTACTGCGATCGTTTGGATCTCG
ATCCCAACCGGCTGTTTGAACTTGAACAACGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTACCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGCGCGCATTACACCAACAACGCCAGCAATATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAGTTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCCCGCATCGCACTGGCAATCCAGGTCATTACCGCGCGTAAAATGGAAACCC
CTGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCTCTGGATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.559

100

0.387
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362