Detailed information NTG0854885

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QY067_RS03500
• Genome accession: NZ_CP129685
• Coordinates: 774592..775464 (-)
• Length: 290 a.a.
• NCBI ID: WP_003094651.1
• Uniprot ID: A0AAQ3LID6
• Organism: Pseudomonas aeruginosa strain PA2500
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 769592..780464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY067_RS03455	-	770453..770623 (-)	171	WP_003094672.1	DUF3094 family protein	-
QY067_RS03460	-	770649..771098 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
QY067_RS03465	-	771095..771724 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QY067_RS03470	-	771857..772282 (+)	426	WP_003094666.1	GNAT family N-acetyltransferase	-
QY067_RS03475	-	772279..772749 (+)	471	WP_003094664.1	hypothetical protein	-
QY067_RS03480	-	772746..773435 (+)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
QY067_RS03485	-	773541..773750 (+)	210	WP_003094660.1	hypothetical protein	-
QY067_RS03490	yacG	773787..773987 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
QY067_RS03495	coaE	773984..774595 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
QY067_RS03500	pilD	774592..775464 (-)	873	WP_003094651.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QY067_RS03505	pilC	775468..776688 (-)	1221	WP_003094649.1	type II secretion system F family protein	Machinery gene
QY067_RS03510	pilB	776692..778392 (-)	1701	WP_003094647.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QY067_RS03515	-	778622..779086 (+)	465	WP_031630343.1	pilin	-
QY067_RS03525	nadC	779290..780138 (-)	849	WP_003094645.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31852.89 Da
• Isoelectric Point: 7.7068

>NTDB_id=854885 QY067_RS03500 WP_003094651.1 774592..775464(-) (pilD) [Pseudomonas aeruginosa strain PA2500]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=854885 QY067_RS03500 WP_003094651.1 774592..775464(-) (pilD) [Pseudomonas aeruginosa strain PA2500]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.516	96.897	0.538
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469