Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PproGo58_RS25280 Genome accession   NZ_AP024503
Coordinates   5702302..5703630 (+) Length   442 a.a.
NCBI ID   WP_207166574.1    Uniprot ID   -
Organism   Pseudomonas protegens strain Go58     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5697302..5708630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PproGo58_RS25260 (PproGo58_50140) pgeF 5698936..5699661 (-) 726 WP_207166573.1 peptidoglycan editing factor PgeF -
  PproGo58_RS25265 (PproGo58_50150) rluD 5699658..5700620 (-) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PproGo58_RS25270 (PproGo58_50160) - 5700771..5701793 (+) 1023 WP_102865460.1 outer membrane protein assembly factor BamD -
  PproGo58_RS25275 (PproGo58_50170) - 5701918..5702151 (+) 234 WP_102865514.1 PP0621 family protein -
  PproGo58_RS25280 (PproGo58_50180) pilR 5702302..5703630 (+) 1329 WP_207166574.1 sigma-54 dependent transcriptional regulator Regulator
  PproGo58_RS25285 (PproGo58_50190) thiO 5703627..5704727 (-) 1101 WP_102865458.1 glycine oxidase ThiO -
  PproGo58_RS25290 (PproGo58_50200) - 5704784..5705185 (-) 402 WP_102865457.1 type IV pilin protein -
  PproGo58_RS25295 (PproGo58_50210) - 5705201..5705392 (-) 192 Protein_4997 hypothetical protein -
  PproGo58_RS25300 (PproGo58_50220) - 5705706..5706146 (-) 441 WP_102865456.1 PilX N-terminal domain-containing pilus assembly protein -
  PproGo58_RS25305 (PproGo58_50230) - 5706188..5706898 (-) 711 WP_207166575.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PproGo58_RS25310 (PproGo58_50240) pilV 5706907..5707338 (-) 432 WP_102865454.1 type IV pilus modification protein PilV -
  PproGo58_RS25315 (PproGo58_50250) - 5707729..5708253 (+) 525 WP_207166576.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49603.36 Da        Isoelectric Point: 7.7766

>NTDB_id=85484 PproGo58_RS25280 WP_207166574.1 5702302..5703630(+) (pilR) [Pseudomonas protegens strain Go58]
MNPMPRVLVVDEAMEVRALVEITLGRMRLHTQSARTLQEARTHLARERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPGTQACALEVGACDLLHKPLHPMRLREWISSRLKRLPTATKKLPDHQLLGHSPPMDNLRQHIDKLAPSLAAVYIS
GESGSGKEQVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALREHPGDIEILARHILQ
RLAKSGDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDLPAPSLPPNLDLALHLQ
QVERHLLLQALEESRWNRTAAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=85484 PproGo58_RS25280 WP_207166574.1 5702302..5703630(+) (pilR) [Pseudomonas protegens strain Go58]
ATGAACCCAATGCCTAGGGTGCTGGTGGTCGATGAGGCCATGGAAGTCCGTGCCCTCGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCCCGGACTCACCTGGCCCGGGAGCGCTTCGACCTGTGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAATGACCCAGGCACGCAGGCCTGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCGCTACACCC
CATGCGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCGCCACAAAAAAGCTACCCGACCATCAGTTGT
TGGGGCATTCACCGCCCATGGACAACCTGCGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAGCAAGTGGCGCGTTTGATCCACCAGTTGGGTCCCAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGCGCCATTCCTGGCGAACTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TGGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGGGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTTGCC
ATGCAAGTGAAGCTACTGCGTGCACTGCAGGAAAGGTCTGTGCGTCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGTGCGAGGTAGAATCCGGCCGCTTTCGCCAGGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTCCCCGCGCTGCGCGAGCACCCGGGAGATATCGAGATACTGGCGCGGCACATTCTGCAA
CGCCTGGCCAAATCCGGCGACAAGCCTGCCACCCAACTAAGCCCGCAAGCACTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAGAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCATGGATAGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACCTCCCCGCCCCTTCGCTCCCTCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTATTGCTCCAGGCCCTGGAGGAAAGCCGCTGGAACCGCACAGCGGCGGCCCGACGGCTGAGTCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGCCTGAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(7-113)

Sigma-54 interaction domain (Sigma54_activat)

(133-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.077

100

0.622
  pilR Acinetobacter baumannii strain A118

44.035

100

0.459

Multiple sequence alignment