Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V1460_RS35360 Genome accession   NZ_CP146101
Coordinates   7882714..7883394 (-) Length   226 a.a.
NCBI ID   WP_338677670.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7877714..7888394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS35340 (V1460_35340) - 7878612..7879439 (+) 828 WP_338677666.1 diacylglycerol kinase -
  V1460_RS35345 (V1460_35345) - 7879522..7880673 (-) 1152 WP_338677667.1 MerR family transcriptional regulator -
  V1460_RS35350 (V1460_35350) - 7880735..7881241 (-) 507 WP_338677668.1 MarR family transcriptional regulator -
  V1460_RS35355 (V1460_35355) - 7881385..7882617 (-) 1233 WP_338677669.1 cytochrome P450 -
  V1460_RS35360 (V1460_35360) vraR 7882714..7883394 (-) 681 WP_338677670.1 response regulator transcription factor Regulator
  V1460_RS35365 (V1460_35365) - 7883391..7884758 (-) 1368 WP_407077655.1 sensor histidine kinase -
  V1460_RS35370 (V1460_35370) - 7884928..7885875 (-) 948 WP_338677672.1 alpha/beta hydrolase -
  V1460_RS35375 (V1460_35375) kynU 7886310..7887530 (-) 1221 WP_338677673.1 kynureninase -
  V1460_RS35380 (V1460_35380) - 7887523..7888368 (-) 846 WP_338677675.1 tryptophan 2,3-dioxygenase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24205.93 Da        Isoelectric Point: 4.8162

>NTDB_id=854681 V1460_RS35360 WP_338677670.1 7882714..7883394(-) (vraR) [Streptomyces sp. SCSIO 30461]
MNSTTAGTGIRVLIVDDQAMVREGFSVLLNAMPDIEVIGEAVNGREAVAQVAALRPDVVLMDIRMPELNGIEATREIVAA
DSDAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSRISTSPRLPAMARI
GDLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=854681 V1460_RS35360 WP_338677670.1 7882714..7883394(-) (vraR) [Streptomyces sp. SCSIO 30461]
ATGAACAGCACCACTGCCGGGACAGGGATCCGCGTACTGATCGTGGACGACCAGGCGATGGTCCGCGAGGGCTTCTCGGT
GCTGCTGAACGCGATGCCGGACATCGAGGTCATCGGCGAGGCGGTCAACGGCCGCGAGGCGGTCGCACAGGTCGCGGCCC
TGCGCCCGGACGTCGTTCTGATGGACATCCGTATGCCGGAGCTCAACGGCATCGAGGCCACCCGCGAGATCGTGGCGGCG
GACTCCGACGCGAAGGTGCTGGTCCTCACCACATTCGACCTGGACGAGTACGTCTACCAGGCCCTGCGTGCCGGAGCCTC
CGGTTTCCTGCTCAAGGACGCGTCGGCACGGCAGCTCGCGGACGGGGTACGGGTCGTGGCGGCGGGTGAGGCACTGCTCG
CGCCGACCGTCACCCGCCGTCTGATCACGGAGTTCTCCCGGATCTCCACCTCGCCCCGGCTTCCGGCGATGGCTCGGATC
GGCGATCTGACGGAGCGCGAGACGGAGGTGCTGGTGCTGATCGCCCAGGGCCTGTCGAACGCCGAGATCGCCTCGCACCT
GGTGGTCGCCGAGTCCACGATCAAGACGCATGTCAGCCGGATCCTGGTGAAGCTGGGGCTCCGGGACCGCACACAGGCGG
CGGTGTTCGCGTACGAGGCGAGGCTGGTCACGCCGGGGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-217)

Response regulator receiver domain (Response_reg)

(12-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.327

94.69

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

42.922

96.903

0.416