Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V1460_RS20490 Genome accession   NZ_CP146101
Coordinates   4617275..4617910 (+) Length   211 a.a.
NCBI ID   WP_338675102.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4612275..4622910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS20460 (V1460_20460) - 4612570..4614330 (-) 1761 WP_338675096.1 urease subunit alpha -
  V1460_RS20465 (V1460_20465) - 4614323..4614634 (-) 312 WP_338675097.1 urease subunit beta -
  V1460_RS20470 (V1460_20470) - 4614650..4614952 (-) 303 WP_338675098.1 urease subunit gamma -
  V1460_RS20475 (V1460_20475) - 4615096..4615716 (-) 621 WP_338675099.1 helix-turn-helix domain-containing protein -
  V1460_RS20480 (V1460_20480) - 4615829..4616836 (+) 1008 WP_338675100.1 ABC transporter permease -
  V1460_RS20485 (V1460_20485) - 4616924..4617217 (-) 294 WP_338675101.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  V1460_RS20490 (V1460_20490) clpP 4617275..4617910 (+) 636 WP_338675102.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V1460_RS20495 (V1460_20495) - 4617918..4618226 (+) 309 WP_338675103.1 hypothetical protein -
  V1460_RS20500 (V1460_20500) - 4618736..4619212 (+) 477 WP_338675104.1 C40 family peptidase -
  V1460_RS20505 (V1460_20505) - 4619287..4619862 (+) 576 WP_338675105.1 DUF6328 family protein -
  V1460_RS20510 (V1460_20510) - 4619868..4621013 (-) 1146 WP_338678132.1 8-amino-7-oxononanoate synthase -
  V1460_RS20515 (V1460_20515) bioB 4621171..4622421 (+) 1251 WP_338675106.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22811.95 Da        Isoelectric Point: 5.2691

>NTDB_id=854652 V1460_RS20490 WP_338675102.1 4617275..4617910(+) (clpP) [Streptomyces sp. SCSIO 30461]
MQRSQARYVLPEFHERTTSGIRTLDPYSKLLGERIVFLGTPIDETAASDVVAQLLYLEYAAPEQDIQLYINSPGGPISAM
TSIYDTMQVVGCDVVTTCIGQASSTAAVLLAAGTPGKRMALPGARVVVQQPALPEPMRGQPSDLDIQARELLRMHDQIAA
MLVRHTGQSDESVRETLDRVTVFDAASAQDFGLIDHVIKNRKASAASSGTR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=854652 V1460_RS20490 WP_338675102.1 4617275..4617910(+) (clpP) [Streptomyces sp. SCSIO 30461]
ATGCAGCGTTCACAGGCCCGCTATGTGCTTCCGGAGTTCCACGAGCGGACCACGTCCGGAATCCGCACCCTGGACCCGTA
CTCGAAACTGCTGGGCGAGCGCATCGTCTTCCTCGGCACGCCGATCGACGAGACCGCGGCCAGCGACGTGGTCGCCCAAC
TGCTCTACCTCGAATACGCCGCCCCCGAGCAGGACATCCAGCTCTACATCAACTCGCCCGGCGGCCCCATCAGTGCGATG
ACCTCCATCTACGACACGATGCAGGTGGTGGGCTGCGACGTGGTCACCACCTGCATCGGGCAGGCTTCTTCCACGGCCGC
CGTACTCCTCGCCGCGGGCACCCCCGGCAAGCGCATGGCGCTGCCGGGAGCCCGGGTCGTGGTCCAGCAGCCCGCGCTGC
CCGAGCCGATGCGGGGGCAGCCGTCCGATCTGGACATCCAGGCCCGGGAATTGCTGCGGATGCACGATCAGATCGCCGCC
ATGCTCGTACGCCACACCGGGCAGAGCGACGAAAGCGTCCGCGAGACGCTCGACCGCGTCACGGTCTTCGACGCGGCTTC
CGCGCAGGACTTCGGCCTGATCGACCATGTCATCAAGAACCGCAAGGCATCGGCGGCTTCGTCCGGGACACGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(22-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.158

90.047

0.389
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.708

90.995

0.389