Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V1460_RS05590 Genome accession   NZ_CP146101
Coordinates   1220097..1220789 (-) Length   230 a.a.
NCBI ID   WP_338672500.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215097..1225789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS05570 (V1460_05570) - 1215796..1216389 (-) 594 WP_338672494.1 TetR family transcriptional regulator -
  V1460_RS05575 (V1460_05575) - 1216509..1217492 (+) 984 WP_338672496.1 aldo/keto reductase -
  V1460_RS05580 (V1460_05580) - 1217732..1218370 (+) 639 WP_338672498.1 alpha-ketoglutarate-dependent dioxygenase AlkB -
  V1460_RS05585 (V1460_05585) - 1218602..1219969 (-) 1368 WP_338672499.1 cytochrome P450 -
  V1460_RS05590 (V1460_05590) vraR 1220097..1220789 (-) 693 WP_338672500.1 response regulator transcription factor Regulator
  V1460_RS05595 (V1460_05595) - 1220786..1222048 (-) 1263 WP_407077594.1 sensor histidine kinase -
  V1460_RS05600 (V1460_05600) - 1222218..1223411 (-) 1194 WP_338672502.1 acyltransferase -
  V1460_RS05605 (V1460_05605) - 1223404..1224417 (-) 1014 WP_338672503.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24488.16 Da        Isoelectric Point: 4.8268

>NTDB_id=854628 V1460_RS05590 WP_338672500.1 1220097..1220789(-) (vraR) [Streptomyces sp. SCSIO 30461]
MTTPPPPIRVLVADDQMMVRQGFTMLLGGEPDIEVVGQAVDGHDAIAQVSELAPDVVLMDIRMPGLGGIEATARITAPAD
STVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHSVRVVAAGEALLSPNLTKRLIGEYSRVTRTVSRDPGKARV
GALTERETEVLSLIAQGLSNTEIAELLVVAEQTVKTHVGRILAKSGLRDRTQAAVFAFETGLVRPSGRMT

Nucleotide


Download         Length: 693 bp        

>NTDB_id=854628 V1460_RS05590 WP_338672500.1 1220097..1220789(-) (vraR) [Streptomyces sp. SCSIO 30461]
ATGACGACGCCCCCGCCCCCCATCCGTGTGCTGGTCGCCGACGACCAGATGATGGTCCGCCAGGGCTTCACCATGCTCCT
CGGCGGCGAACCGGACATCGAGGTCGTCGGCCAGGCCGTCGACGGTCATGACGCCATCGCGCAGGTCTCCGAACTCGCCC
CGGATGTGGTCCTGATGGACATCCGCATGCCCGGACTCGGCGGCATCGAGGCGACCGCGCGCATCACGGCCCCCGCCGAC
TCCACGGTGAAGGTCCTCGTCCTGACCACCTTCGACCTGGACGAGTACGTGTACGAGGCACTGCGCGCGGGGGCCTCCGG
TTTCCTGCTGAAGGACGCCTCCGCCGACGAACTTGCCCATTCGGTCAGGGTGGTGGCGGCAGGCGAGGCGCTGCTCTCCC
CTAATCTCACCAAGCGGCTCATCGGCGAGTACTCCCGGGTCACCCGGACGGTCTCGCGCGACCCGGGCAAGGCGCGCGTG
GGAGCGCTGACGGAGCGCGAGACCGAGGTGCTGTCCCTGATAGCCCAGGGCCTTTCCAACACCGAGATCGCCGAGCTGCT
GGTCGTCGCCGAGCAGACCGTGAAGACCCATGTGGGCAGGATTCTCGCCAAGTCGGGTCTGCGTGACCGCACCCAGGCCG
CGGTCTTCGCCTTTGAGACAGGTCTCGTCCGCCCGTCAGGACGCATGACATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-217)

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.818

95.652

0.4
  degU Bacillus subtilis subsp. subtilis str. 168

40.625

97.391

0.396