Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V2W30_RS32210 Genome accession   NZ_CP146022
Coordinates   6950344..6951012 (+) Length   222 a.a.
NCBI ID   WP_338702023.1    Uniprot ID   A0ACD5AK11
Organism   Streptomyces sp. Q6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6945344..6956012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS32190 (V2W30_32190) - 6945354..6946223 (+) 870 WP_338702019.1 amino acid ABC transporter permease -
  V2W30_RS32195 (V2W30_32195) - 6946415..6947173 (-) 759 WP_338702020.1 hypothetical protein -
  V2W30_RS32200 (V2W30_32200) ggt 6947277..6949112 (+) 1836 WP_338702021.1 gamma-glutamyltransferase -
  V2W30_RS32205 (V2W30_32205) - 6949190..6950347 (+) 1158 WP_338702022.1 sensor histidine kinase -
  V2W30_RS32210 (V2W30_32210) vraR 6950344..6951012 (+) 669 WP_338702023.1 response regulator transcription factor Regulator
  V2W30_RS32215 (V2W30_32215) map 6951049..6951816 (-) 768 WP_338702024.1 type I methionyl aminopeptidase -
  V2W30_RS32220 (V2W30_32220) - 6951905..6952156 (+) 252 WP_338702025.1 helix-turn-helix transcriptional regulator -
  V2W30_RS32225 (V2W30_32225) - 6952284..6953591 (+) 1308 Protein_6354 hypothetical protein -
  V2W30_RS32230 (V2W30_32230) - 6953730..6954572 (+) 843 WP_338702026.1 nitrilase-related carbon-nitrogen hydrolase -
  V2W30_RS32235 (V2W30_32235) - 6954647..6955945 (+) 1299 WP_338702027.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23723.32 Da        Isoelectric Point: 4.6630

>NTDB_id=854611 V2W30_RS32210 WP_338702023.1 6950344..6951012(+) (vraR) [Streptomyces sp. Q6]
MTVRVLLVDDQPLVRSGLRVLIADTDDLEVVGEAGGGAEAVELAARLRPDVVVMDIRMPGMDGIEATRRITAADGDTARV
LVLTTFDEDDHVYGALRAGASGFAVKDMALDDILAAVRVVAAGDALIAPAVTRRLIADFVGRDPGVLPVRPSRSVEGVTE
REREVLTLVGLGRSNQEIAEELYISMATTKSHVARLFTKLGARDRVQLVIIAYELGIVAPSR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=854611 V2W30_RS32210 WP_338702023.1 6950344..6951012(+) (vraR) [Streptomyces sp. Q6]
ATGACCGTACGGGTCCTGCTCGTCGACGACCAGCCGCTGGTCCGCTCCGGACTGCGGGTCCTCATCGCGGATACGGACGA
TCTGGAGGTCGTCGGCGAGGCGGGCGGCGGGGCCGAGGCGGTCGAGCTGGCCGCGCGTCTGCGGCCCGACGTCGTCGTGA
TGGACATCAGGATGCCCGGCATGGACGGCATCGAGGCGACCCGGCGGATCACCGCGGCCGACGGCGACACCGCCCGGGTC
CTCGTCCTGACCACCTTCGACGAGGACGACCACGTGTACGGGGCGCTGCGCGCCGGGGCCAGCGGGTTCGCCGTCAAGGA
CATGGCGCTCGACGACATCCTGGCCGCGGTGCGGGTGGTCGCCGCGGGGGACGCGCTCATCGCGCCCGCCGTCACCCGCC
GGCTGATCGCGGACTTCGTGGGGCGGGACCCGGGGGTCCTGCCCGTGCGCCCGTCCCGCTCCGTGGAGGGGGTCACGGAG
CGGGAGCGGGAGGTGCTGACCTTGGTGGGGCTCGGGCGCTCGAACCAGGAGATCGCCGAGGAGCTGTACATCAGCATGGC
CACCACCAAGTCCCATGTGGCCCGGCTCTTCACCAAGCTGGGCGCCCGGGACCGGGTCCAACTCGTCATCATCGCGTACG
AGTTGGGGATCGTGGCGCCGTCCCGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(159-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.991

98.198

0.383
  degU Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.36