Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V2W30_RS31925 Genome accession   NZ_CP146022
Coordinates   6894213..6894836 (-) Length   207 a.a.
NCBI ID   WP_338701967.1    Uniprot ID   A0ACD5AKC3
Organism   Streptomyces sp. Q6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6889213..6899836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS31905 (V2W30_31905) - 6890777..6891379 (-) 603 WP_338701963.1 nucleotidyltransferase family protein -
  V2W30_RS31910 (V2W30_31910) - 6891557..6891877 (+) 321 WP_338701964.1 DUF5955 family protein -
  V2W30_RS31915 (V2W30_31915) - 6891996..6893483 (-) 1488 WP_338701965.1 PLP-dependent aminotransferase family protein -
  V2W30_RS31920 (V2W30_31920) - 6893668..6894120 (+) 453 WP_338701966.1 universal stress protein -
  V2W30_RS31925 (V2W30_31925) vraR 6894213..6894836 (-) 624 WP_338701967.1 response regulator transcription factor Regulator
  V2W30_RS31930 (V2W30_31930) - 6894833..6896011 (-) 1179 WP_338701968.1 sensor histidine kinase -
  V2W30_RS31935 (V2W30_31935) - 6896148..6897212 (+) 1065 WP_338701969.1 FtsX-like permease family protein -
  V2W30_RS31940 (V2W30_31940) amiE 6897209..6897898 (+) 690 WP_338701970.1 ABC transporter ATP-binding protein Regulator
  V2W30_RS31945 (V2W30_31945) - 6897942..6898742 (-) 801 WP_338701971.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21548.84 Da        Isoelectric Point: 5.0631

>NTDB_id=854609 V2W30_RS31925 WP_338701967.1 6894213..6894836(-) (vraR) [Streptomyces sp. Q6]
MIRLLLADDHPVVRAGLRAVLAAEPDFEIVAEAPSAERAVELAGAGGVDVVLMDLQFGAGMHGSQATALIAALPEGPRVL
VLTTYDTDADILAAVEAGAAGYLLKDAPPEELAAAVRTAASGRSALAPAVALRLMDRMRAPAEALSRRELEVLQLVRDGL
SNADIARELFLSQATVKSHLVHVYAKLGVDSRTSAVAAATSRGLMRP

Nucleotide


Download         Length: 624 bp        

>NTDB_id=854609 V2W30_RS31925 WP_338701967.1 6894213..6894836(-) (vraR) [Streptomyces sp. Q6]
GTGATCCGGCTGCTGCTCGCCGACGACCATCCCGTCGTACGGGCCGGTCTGCGCGCCGTCCTCGCCGCCGAACCGGACTT
CGAGATCGTCGCGGAGGCGCCGTCGGCGGAGCGGGCGGTCGAACTCGCCGGTGCCGGAGGGGTCGACGTCGTCCTCATGG
ACCTTCAGTTCGGCGCGGGCATGCACGGGTCGCAGGCCACGGCGCTCATCGCCGCGCTGCCCGAGGGGCCGCGCGTCCTC
GTCCTGACCACGTACGACACCGACGCGGACATCCTCGCCGCGGTGGAGGCGGGCGCCGCGGGCTATCTCCTCAAGGACGC
GCCGCCGGAGGAGCTGGCGGCGGCCGTCCGCACGGCCGCCTCCGGCCGGTCCGCGCTCGCCCCCGCGGTCGCGCTGCGCC
TGATGGACCGGATGCGGGCGCCCGCGGAGGCGCTCAGCCGCCGCGAGCTTGAGGTCCTCCAGCTCGTCCGGGACGGCCTG
TCGAACGCGGACATCGCCCGTGAGCTGTTCCTGAGCCAGGCCACGGTGAAGTCCCATCTGGTGCACGTCTACGCCAAGCT
GGGCGTCGACTCGCGCACGTCGGCGGTGGCCGCGGCCACCTCCCGCGGCCTGATGCGTCCGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(144-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.885

100

0.362