Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V2W30_RS31940 Genome accession   NZ_CP146022
Coordinates   6897209..6897898 (+) Length   229 a.a.
NCBI ID   WP_338701970.1    Uniprot ID   A0ACD5AKD2
Organism   Streptomyces sp. Q6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6892209..6902898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS31920 (V2W30_31920) - 6893668..6894120 (+) 453 WP_338701966.1 universal stress protein -
  V2W30_RS31925 (V2W30_31925) vraR 6894213..6894836 (-) 624 WP_338701967.1 response regulator transcription factor Regulator
  V2W30_RS31930 (V2W30_31930) - 6894833..6896011 (-) 1179 WP_338701968.1 sensor histidine kinase -
  V2W30_RS31935 (V2W30_31935) - 6896148..6897212 (+) 1065 WP_338701969.1 FtsX-like permease family protein -
  V2W30_RS31940 (V2W30_31940) amiE 6897209..6897898 (+) 690 WP_338701970.1 ABC transporter ATP-binding protein Regulator
  V2W30_RS31945 (V2W30_31945) - 6897942..6898742 (-) 801 WP_338701971.1 IclR family transcriptional regulator -
  V2W30_RS31950 (V2W30_31950) allB 6898964..6900310 (+) 1347 WP_338701972.1 allantoinase AllB -
  V2W30_RS31955 (V2W30_31955) alc 6900315..6901439 (+) 1125 WP_338701973.1 allantoicase -
  V2W30_RS31960 (V2W30_31960) - 6901508..6902239 (-) 732 WP_338701974.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24072.48 Da        Isoelectric Point: 6.6526

>NTDB_id=854610 V2W30_RS31940 WP_338701970.1 6897209..6897898(+) (amiE) [Streptomyces sp. Q6]
MTLLLDDITLTYPDGDGRLTALDRVSLDVSAGSLTAVVGPSGSGKSSLLAVAATLVTPDSGRVVVDGAEARTLSRSDAAR
LRRRAIGIVFQQPNLLPSLTALEQLQVMAHLDGRRPREVLSAAEELLDAVGLAAQAHRRPHQLSGGQRQRVNIARALMNA
PRVLLVDEPTSALDHERGAAVLELLGALTRERGTATVLVTHDRGALGVADRVVEMVDGRLTEAGVPTGP

Nucleotide


Download         Length: 690 bp        

>NTDB_id=854610 V2W30_RS31940 WP_338701970.1 6897209..6897898(+) (amiE) [Streptomyces sp. Q6]
ATGACCCTGCTGCTCGACGACATCACCCTGACCTACCCCGACGGCGACGGGCGGCTCACCGCCCTCGACCGGGTGAGTCT
CGACGTCTCCGCCGGGAGCCTGACGGCCGTCGTCGGGCCGTCCGGATCGGGCAAGTCGAGCCTGCTCGCGGTCGCGGCGA
CGCTCGTGACGCCGGACAGCGGGCGGGTGGTCGTCGACGGGGCCGAGGCCAGGACGCTGAGCCGGTCCGACGCGGCCCGG
CTGCGCCGCCGCGCCATCGGCATCGTCTTCCAGCAGCCGAATCTGCTGCCGTCGCTCACCGCCCTGGAGCAACTCCAGGT
GATGGCGCACCTGGACGGCCGCCGCCCGCGCGAAGTCCTTTCGGCGGCCGAGGAGTTGCTGGACGCGGTGGGTCTGGCCG
CCCAGGCGCACCGGCGGCCGCACCAGCTCTCCGGCGGTCAGCGCCAGCGCGTCAACATCGCGCGGGCCCTGATGAACGCT
CCACGGGTGCTCCTCGTCGACGAGCCGACCAGCGCGCTCGATCACGAACGGGGCGCCGCCGTCCTGGAACTGCTGGGCGC
ACTGACGCGGGAGCGCGGGACGGCGACGGTGCTCGTGACGCACGACCGGGGGGCCCTGGGGGTCGCCGACCGGGTCGTGG
AGATGGTGGACGGCCGTCTGACGGAGGCCGGAGTGCCGACCGGGCCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

36.681

100

0.367
  amiE Streptococcus thermophilus LMD-9

36.681

100

0.367
  amiE Streptococcus salivarius strain HSISS4

36.404

99.563

0.362