Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   V2W30_RS22095 Genome accession   NZ_CP146022
Coordinates   4716685..4718094 (-) Length   469 a.a.
NCBI ID   WP_338699007.1    Uniprot ID   A0ACD5AEY7
Organism   Streptomyces sp. Q6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4711685..4723094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS22075 (V2W30_22075) - 4712635..4713315 (+) 681 WP_338698999.1 response regulator transcription factor -
  V2W30_RS22080 (V2W30_22080) - 4713359..4714021 (-) 663 WP_338699001.1 phosphatase PAP2 family protein -
  V2W30_RS22085 (V2W30_22085) - 4714210..4715031 (+) 822 WP_338699003.1 hypothetical protein -
  V2W30_RS22090 (V2W30_22090) disA 4715472..4716593 (-) 1122 WP_338699005.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  V2W30_RS22095 (V2W30_22095) radA/sms 4716685..4718094 (-) 1410 WP_338699007.1 DNA repair protein RadA Machinery gene
  V2W30_RS22100 (V2W30_22100) - 4718319..4720030 (+) 1712 Protein_4354 hypothetical protein -
  V2W30_RS22105 (V2W30_22105) - 4720043..4720906 (-) 864 WP_338699009.1 hypothetical protein -
  V2W30_RS22110 (V2W30_22110) - 4720987..4721919 (+) 933 WP_338699011.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49559.72 Da        Isoelectric Point: 8.2544

>NTDB_id=854583 V2W30_RS22095 WP_338699007.1 4716685..4718094(-) (radA/sms) [Streptomyces sp. Q6]
MAARTKSAKDRPSYRCTECGWQTAKWLGRCGECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASEEHKTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVLEVADIGDALRVLPKGRRREAPRETEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=854583 V2W30_RS22095 WP_338699007.1 4716685..4718094(-) (radA/sms) [Streptomyces sp. Q6]
ATGGCTGCCCGTACCAAATCCGCGAAGGACCGACCGTCGTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAATGGCT
GGGCCGCTGCGGCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCCCCCGCGGTGCGCACGACCGCCCCGGGAC
GCGTCACCACGTCCGCCGTGCCGATCGGCCAGGTGGACGGCAGGCAGGCGACGGCCCGCTCCACCGGCGTGCCCGAGCTC
GACCGCGTCCTCGGCGGCGGTCTCGTACCGGGTGCGGTGGTCCTGCTCGCGGGCGAGCCCGGCGTCGGTAAGTCCACGCT
GCTCCTCGATGTCGCGGCCAAGTCGGCGAGCGAGGAGCACAAGACCCTCTATGTGACGGGCGAGGAGTCGGCGTCCCAGG
TGCGGCTGCGCGCCGACCGCATCAAGGCCATCGACGACCACCTGTACCTGGCGGCGGAGACCGACCTCTCCGCCGTCCTC
GGCCACCTGGACGCCGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTGGCGTCACCGGAGATCGACGGCGC
GCCCGGCGGCATGGCACAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCGACGCTCC
TCGTGGGCCACGTCACGAAGGACGGCGCGATCGCGGGACCACGGCTCCTGGAGCACCTGGTGGACGTCGTCCTCAGCTTC
GAGGGCGACCGGCACGCGCGGCTGCGTCTCGTACGCGGCGTCAAGAACCGGTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGTCTGTTCCTGACGCGGCGCGCCGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACCACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTCGAACAGCGCGGCCG
GATCAGCGCCTTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGTGGCGTGAAGCTCTCCGAACCGGCCGCCGACCTGG
CCATCGCGCTCGCCCTCGCGTCGGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGAGAAGTAGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGACGGCTCGCGGAGGCGCACCGGCTCGGCTTCACGCACGCCCTCGT
CCCGAGCGACCCGGGCAAGGTTCCGGCCGGTATGAAGGTCCTGGAAGTCGCCGATATAGGGGACGCGCTGCGGGTGCTGC
CGAAGGGCCGTCGCCGAGAGGCCCCACGGGAGACGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus mitis SK321

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412