Detailed information NTG0854577

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QTO83_RS24055
• Genome accession: NZ_CP129616
• Coordinates: 5017165..5017962 (+)
• Length: 265 a.a.
• NCBI ID: WP_064345299.1
• Uniprot ID: -
• Organism: Klebsiella oxytoca strain NMI2990_17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5012165..5022962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTO83_RS24020 (QTO83_024015)	gspH	5012303..5012815 (+)	513	WP_064345304.1	type II secretion system minor pseudopilin GspH	-
QTO83_RS24025 (QTO83_024020)	gspI	5012812..5013177 (+)	366	WP_064345303.1	type II secretion system minor pseudopilin GspI	-
QTO83_RS24030 (QTO83_024025)	gspJ	5013174..5013770 (+)	597	WP_064345302.1	type II secretion system minor pseudopilin GspJ	-
QTO83_RS24035 (QTO83_024030)	gspK	5013767..5014747 (+)	981	WP_004107989.1	type II secretion system minor pseudopilin GspK	-
QTO83_RS24040 (QTO83_024035)	gspL	5014740..5015936 (+)	1197	WP_064345301.1	type II secretion system protein GspL	-
QTO83_RS24045 (QTO83_024040)	gspM	5015929..5016414 (+)	486	WP_016808874.1	type II secretion system protein GspM	-
QTO83_RS24050 (QTO83_024045)	-	5016404..5017162 (+)	759	WP_064345300.1	type II secretion system protein N	-
QTO83_RS24055 (QTO83_024050)	pilD	5017165..5017962 (+)	798	WP_064345299.1	A24 family peptidase	Machinery gene
QTO83_RS24060 (QTO83_024055)	hrpB	5018148..5020577 (-)	2430	WP_064345298.1	ATP-dependent helicase HrpB	-
QTO83_RS24065 (QTO83_024060)	thpR	5020650..5021186 (+)	537	WP_004108002.1	RNA 2',3'-cyclic phosphodiesterase	-
QTO83_RS24070 (QTO83_024065)	sfsA	5021186..5021902 (+)	717	WP_004108004.1	DNA/RNA nuclease SfsA	-
QTO83_RS24075 (QTO83_024070)	dksA	5022067..5022522 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29165.96 Da
• Isoelectric Point: 8.3432

>NTDB_id=854577 QTO83_RS24055 WP_064345299.1 5017165..5017962(+) (pilD) [Klebsiella oxytoca strain NMI2990_17]
MENIALLPEFAAQFPLIWGGFLFLSGLAFGSFFNVVIHRLPLMMEYAEGVNLCLPASFCPQCRHPIAWRDNIPLLSFLWL
KGRSRCCGRPISRRYPLMELATGALFMLVGYLIPAGMPLLGGLILLSLLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLT
DLFAPLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPHTLLLASASGLIWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWGQV

Nucleotide

• Length: 798 bp

>NTDB_id=854577 QTO83_RS24055 WP_064345299.1 5017165..5017962(+) (pilD) [Klebsiella oxytoca strain NMI2990_17]
GTGGAAAACATCGCATTGTTACCCGAGTTCGCCGCGCAATTCCCGTTAATCTGGGGCGGTTTTTTATTCTTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAGTACGCAGAGGGAGTGAATCTCTGCC
TCCCCGCATCGTTCTGTCCGCAGTGCCGTCACCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AAGGGGCGTTCGCGCTGCTGCGGGCGACCGATTTCACGTCGCTATCCGCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGGTACCTGATCCCTGCGGGCATGCCGCTGCTGGGCGGGTTAATTTTATTGTCGCTGCTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACTCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTACC
GATCTCTTCGCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATCTATCGCTGTGGTCAGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGTGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGGCGCTGCCGCATACGCTGCTGCTGGCTTCCGCCAGCGGCCTGATCTGGACACTGCTGCAGCGCCTGGTAACCCGTCGT
TCGCTCGAACAGCCCCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGGGCCAGGTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.425	98.491	0.487
pilD	Vibrio campbellii strain DS40M4	43.841	100	0.457
pilD	Neisseria gonorrhoeae MS11	47.826	95.472	0.457
pilD	Acinetobacter nosocomialis M2	44.788	97.736	0.438
pilD	Acinetobacter baumannii D1279779	44.402	97.736	0.434