Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V2W30_RS21145 Genome accession   NZ_CP146022
Coordinates   4519826..4520491 (+) Length   221 a.a.
NCBI ID   WP_338698703.1    Uniprot ID   A0ACD5AET3
Organism   Streptomyces sp. Q6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4514826..4525491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS21125 (V2W30_21125) kynU 4515405..4516604 (+) 1200 WP_338698699.1 kynureninase -
  V2W30_RS21130 (V2W30_21130) - 4516597..4517237 (-) 641 Protein_4162 TetR/AcrR family transcriptional regulator -
  V2W30_RS21135 (V2W30_21135) - 4517380..4518256 (+) 877 Protein_4163 alpha/beta hydrolase -
  V2W30_RS21140 (V2W30_21140) - 4518480..4519829 (+) 1350 WP_338698701.1 histidine kinase -
  V2W30_RS21145 (V2W30_21145) vraR 4519826..4520491 (+) 666 WP_338698703.1 response regulator transcription factor Regulator
  V2W30_RS21150 (V2W30_21150) - 4520511..4521743 (+) 1233 WP_338698705.1 cytochrome P450 -
  V2W30_RS21155 (V2W30_21155) - 4521755..4523364 (-) 1610 Protein_4167 ABC transporter permease -
  V2W30_RS21160 (V2W30_21160) - 4523361..4524284 (-) 924 WP_338698706.1 ABC transporter ATP-binding protein -
  V2W30_RS21165 (V2W30_21165) - 4524387..4524896 (+) 510 WP_338698707.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23809.57 Da        Isoelectric Point: 4.7614

>NTDB_id=854577 V2W30_RS21145 WP_338698703.1 4519826..4520491(+) (vraR) [Streptomyces sp. Q6]
MIKVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGSEAITKVRELRPDVVLMDIRMPELNGIEATRAIVAADEGAKVLV
LTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRIVASGEALLAPTVTRRLITEFSKLADAPKPLAGRHADAYGELTE
RETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=854577 V2W30_RS21145 WP_338698703.1 4519826..4520491(+) (vraR) [Streptomyces sp. Q6]
ATGATCAAGGTTCTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTGCTGCTCGGCGCGATGCCCGACAT
CGAGGTCGTCGGCGAGGCGGTCAACGGCAGTGAGGCGATCACCAAGGTCCGCGAACTGCGCCCCGACGTCGTCCTGATGG
ACATCCGCATGCCGGAGCTGAACGGCATCGAGGCGACCCGTGCGATCGTCGCCGCCGACGAGGGCGCGAAGGTCCTCGTC
CTGACCACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGCGCCTCCGGGTTCCTCCTCAAGGACGCCTC
GGCCCGCCAACTCGCGGACGGCGTACGGATCGTGGCGTCCGGCGAGGCGCTGCTCGCGCCGACGGTGACGCGCCGCCTGA
TCACCGAGTTCTCGAAGCTCGCCGACGCCCCGAAGCCGCTCGCGGGCCGGCACGCCGACGCGTACGGCGAGCTGACCGAG
CGCGAGACGGAGGTCCTCGTGCTCATCGCGCAGGGCCTGTCGAACGCCGAGATCGCCGAGCGGCTCGTCGTCGCCGAGTC
GACGATCAAGACCCACGTCAGCCGCGTCCTGGTGAAGCTGGGGCTGCGCGACCGCACGCAGGCGGCGGTCTTCGCGTACG
AGGCACGTCTGGTCACGCCGGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.7

98.19

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

42.202

98.643

0.416