Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V2W30_RS18095 Genome accession   NZ_CP146022
Coordinates   3888864..3889511 (+) Length   215 a.a.
NCBI ID   WP_338697852.1    Uniprot ID   A0ACD5ADT4
Organism   Streptomyces sp. Q6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3883864..3894511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS18075 (V2W30_18075) - 3884842..3885903 (-) 1062 WP_338703667.1 hypothetical protein -
  V2W30_RS18080 (V2W30_18080) - 3885950..3886536 (-) 587 Protein_3576 ankyrin repeat domain-containing protein -
  V2W30_RS18085 (V2W30_18085) - 3886717..3887280 (-) 564 WP_338697850.1 heme-binding protein -
  V2W30_RS18090 (V2W30_18090) - 3887612..3888790 (+) 1179 WP_338703668.1 sensor histidine kinase -
  V2W30_RS18095 (V2W30_18095) vraR 3888864..3889511 (+) 648 WP_338697852.1 response regulator transcription factor Regulator
  V2W30_RS18100 (V2W30_18100) - 3889803..3890303 (+) 501 WP_338697854.1 hypothetical protein -
  V2W30_RS18105 (V2W30_18105) - 3890331..3891014 (-) 684 WP_338697856.1 pentapeptide repeat-containing protein -
  V2W30_RS18110 (V2W30_18110) - 3891212..3892483 (+) 1272 WP_338697858.1 NAD(P)-binding protein -
  V2W30_RS18115 (V2W30_18115) - 3892539..3893555 (+) 1017 WP_338697860.1 zinc-binding dehydrogenase -
  V2W30_RS18120 (V2W30_18120) - 3893609..3894088 (-) 480 WP_338697861.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22725.02 Da        Isoelectric Point: 5.3371

>NTDB_id=854572 V2W30_RS18095 WP_338697852.1 3888864..3889511(+) (vraR) [Streptomyces sp. Q6]
MTGPAEPPTRILLCDDHVVVRAGLLALLDSAPDIEVVGEAGTGEEAVALAAKLSPDVVLMDLQLGDGIDGVETTRRLTSA
DPGGRPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIHAAAQGRTTLSAPVASRVMANMRKPRPTLTDRERD
ILAQLAHGLGNRDIAKALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 648 bp        

>NTDB_id=854572 V2W30_RS18095 WP_338697852.1 3888864..3889511(+) (vraR) [Streptomyces sp. Q6]
ATGACCGGCCCCGCCGAGCCGCCCACCCGGATCCTGCTCTGCGACGACCACGTGGTCGTGCGGGCCGGGCTGCTCGCCCT
CCTGGACAGCGCCCCGGACATCGAGGTCGTCGGCGAGGCGGGCACCGGCGAGGAGGCCGTCGCCCTCGCCGCGAAACTGT
CCCCGGACGTGGTCCTGATGGACCTCCAGCTCGGCGACGGCATCGACGGCGTCGAGACGACCCGCCGCCTCACGTCCGCC
GACCCGGGCGGCAGACCCCACGTCCTCGTCCTCACCACGTACGACACCGACGCCGACATCACCCGCGCCATCGAGGCCGG
CGCCACGGGCTACCTCCTGAAGGCCGAGCGCCCGGAGGAACTGTTCGCCGCGATCCACGCCGCCGCTCAGGGCCGTACGA
CGCTGTCCGCCCCGGTCGCCAGCCGCGTCATGGCCAACATGCGCAAGCCGCGGCCCACCCTCACCGACCGCGAGCGCGAC
ATCCTCGCCCAGCTCGCGCACGGGCTCGGCAACCGGGACATCGCCAAGGCCCTGTTCATCAGCGAGGCCACCGTGAAGAC
GCACCTCGGCCGGATCTACGACAAGCTCGGCGTCGACACCCGGGCGGGCGCGGTCGCGGTGGCGAAGGAGCAACGACTGC
TGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-125)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.321

97.209

0.363
  degU Bacillus subtilis subsp. subtilis str. 168

35.616

100

0.363