Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V2W30_RS08850 Genome accession   NZ_CP146022
Coordinates   1894655..1895296 (-) Length   213 a.a.
NCBI ID   WP_338695062.1    Uniprot ID   A0ACD5A8A2
Organism   Streptomyces sp. Q6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1889655..1900296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS08820 (V2W30_08820) - 1890240..1891178 (-) 939 WP_338695052.1 SPFH domain-containing protein -
  V2W30_RS08825 (V2W30_08825) - 1891305..1891736 (-) 432 WP_338695053.1 NfeD family protein -
  V2W30_RS08830 (V2W30_08830) - 1891805..1892602 (-) 798 WP_338695055.1 ABC transporter ATP-binding protein -
  V2W30_RS08835 (V2W30_08835) - 1892744..1893526 (+) 783 WP_338695056.1 hypothetical protein -
  V2W30_RS08840 (V2W30_08840) - 1893715..1893954 (-) 240 WP_338695057.1 chaplin -
  V2W30_RS08845 (V2W30_08845) - 1894240..1894485 (-) 246 WP_338695060.1 chaplin -
  V2W30_RS08850 (V2W30_08850) vraR 1894655..1895296 (-) 642 WP_338695062.1 response regulator transcription factor Regulator
  V2W30_RS08855 (V2W30_08855) - 1895289..1896434 (-) 1146 WP_338695064.1 GAF domain-containing sensor histidine kinase -
  V2W30_RS08860 (V2W30_08860) - 1896618..1897316 (+) 699 WP_338695066.1 SDR family oxidoreductase -
  V2W30_RS08865 (V2W30_08865) - 1897313..1898380 (+) 1068 WP_338695068.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  V2W30_RS08870 (V2W30_08870) - 1898678..1899415 (+) 738 WP_338695070.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22807.12 Da        Isoelectric Point: 6.0318

>NTDB_id=854558 V2W30_RS08850 WP_338695062.1 1894655..1895296(-) (vraR) [Streptomyces sp. Q6]
MADRIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELKPDVVLMDVKMPGLGGVEALRKLRELGNATK
VLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANNGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=854558 V2W30_RS08850 WP_338695062.1 1894655..1895296(-) (vraR) [Streptomyces sp. Q6]
GTGGCTGACCGAATCAAGGTGCTCCTTGTCGACGACCACCAGGTGGTCCGCCGGGGCCTGCGCACCTTCCTTGAGGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCCGCCGACGGCGCCGAAGGAGTCGCCCGCGCCGAGGAGTTGAAGCCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGCCTGGGCGGAGTCGAGGCCCTGCGCAAGCTCCGCGAACTGGGCAACGCCACCAAG
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTCCCGGCCCTGCGCGCCGGAGCCGCCGGATACGTCTACAA
GGACATCGACCCGGACGCCCTCGCCGGCGCCATCCGCTCCGTGCACGCGGGCCACATCCTGCTCCAGCCCGAGGTGGCGG
GCGCCCTGCTCTCCCAGGAAGAGGCCAACAACGGCCAGGGGAGAGGCGGTTCCCTGACCGAGCGGGAGCGCGAGGTCCTC
GGCCTGATCGCCGACGGCCGTTCCAACCGGGAGATCGCCCGTGCCCTGGTCCTCTCCGAGAAGACGGTGAAGACCCACGT
CTCGAACATCTTGATGAAGCTCGACCTGGCGGACCGCACCCAGGCGGCGCTCTGGGCCGTACGGCACGGGGCCGCGGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.89

98.122

0.46
  degU Bacillus subtilis subsp. subtilis str. 168

39.189

100

0.408