Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V2W30_RS05235 Genome accession   NZ_CP146022
Coordinates   1098758..1099393 (+) Length   211 a.a.
NCBI ID   WP_338694038.1    Uniprot ID   A0ACD5A6R0
Organism   Streptomyces sp. Q6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093758..1104393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS05205 (V2W30_05205) - 1093848..1095569 (-) 1722 WP_338694029.1 urease subunit alpha -
  V2W30_RS05210 (V2W30_05210) - 1095562..1095873 (-) 312 WP_338694030.1 urease subunit beta -
  V2W30_RS05215 (V2W30_05215) - 1095890..1096192 (-) 303 WP_338694032.1 urease subunit gamma -
  V2W30_RS05220 (V2W30_05220) - 1096391..1097011 (-) 621 WP_338694033.1 TetR/AcrR family transcriptional regulator -
  V2W30_RS05225 (V2W30_05225) - 1097159..1098181 (+) 1023 WP_338694035.1 ABC transporter permease -
  V2W30_RS05230 (V2W30_05230) - 1098352..1098660 (-) 309 WP_338694037.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  V2W30_RS05235 (V2W30_05235) clpP 1098758..1099393 (+) 636 WP_338694038.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V2W30_RS05240 (V2W30_05240) - 1099401..1099709 (+) 309 WP_338694039.1 hypothetical protein -
  V2W30_RS05245 (V2W30_05245) - 1100251..1100724 (+) 474 WP_338694040.1 C40 family peptidase -
  V2W30_RS05250 (V2W30_05250) - 1100875..1101390 (+) 516 WP_338694041.1 DUF6328 family protein -
  V2W30_RS05255 (V2W30_05255) - 1101329..1101976 (-) 648 WP_338694043.1 LysE family translocator -
  V2W30_RS05260 (V2W30_05260) - 1102112..1103032 (+) 921 WP_338694045.1 LysR family transcriptional regulator -
  V2W30_RS05265 (V2W30_05265) - 1103040..1103498 (-) 459 WP_338694047.1 ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22892.95 Da        Isoelectric Point: 4.6567

>NTDB_id=854549 V2W30_RS05235 WP_338694038.1 1098758..1099393(+) (clpP) [Streptomyces sp. Q6]
MNNPSSRYVLPEFTEHTATGQRTLDPYAKLLEERIVFLGTPIDDTSANDVMAQFMHLEYTAPDQPISLYINSPGGSFSAM
TAIYDTMRYVGCEVETTCLGQAASVAAVLLAAGAPGKRMMLPGSRVVLDQPALPEPAQGQPTDLEITAREMERVRDQLEG
LLALHSGRTKARIGADIERDTVLTAAQSLEYGLVDHVLTSRKASLGTQDPR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=854549 V2W30_RS05235 WP_338694038.1 1098758..1099393(+) (clpP) [Streptomyces sp. Q6]
ATGAACAATCCGTCCAGCCGCTATGTCCTGCCCGAGTTCACGGAGCACACGGCTACGGGGCAGCGCACGCTCGACCCCTA
CGCGAAGCTGCTCGAAGAACGCATCGTCTTTCTCGGGACCCCGATCGACGACACGTCCGCCAACGACGTGATGGCGCAGT
TCATGCACCTCGAATACACCGCGCCCGACCAGCCGATCTCGCTGTACATCAACTCCCCCGGCGGCTCGTTCAGCGCGATG
ACGGCGATCTACGACACGATGCGGTACGTCGGGTGCGAGGTGGAGACGACATGTCTGGGGCAGGCCGCGTCCGTCGCCGC
GGTGCTCCTCGCGGCCGGGGCGCCCGGGAAGCGGATGATGCTCCCGGGGTCGCGCGTGGTCCTCGACCAGCCCGCCCTGC
CCGAGCCGGCCCAGGGCCAGCCCACCGATCTGGAGATCACCGCCCGTGAGATGGAGCGGGTGCGCGACCAACTGGAGGGT
CTGCTCGCACTGCACTCGGGCCGGACGAAGGCGCGGATCGGCGCGGACATCGAGCGCGACACCGTGCTGACTGCCGCGCA
GAGCCTGGAGTACGGCCTCGTGGACCACGTCCTGACGAGCCGCAAGGCCTCCCTCGGCACTCAGGACCCGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

46.073

90.521

0.417
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.915

89.573

0.393