Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QYT29_RS05360 Genome accession   NZ_CP129560
Coordinates   1075556..1076125 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 727M     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070556..1081125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT29_RS05320 (QYT29_05300) - 1071030..1071638 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  QYT29_RS05325 (QYT29_05305) rplL 1071813..1072181 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QYT29_RS05330 (QYT29_05310) rplJ 1072224..1072724 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QYT29_RS05335 (QYT29_05315) rplA 1072996..1073688 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QYT29_RS05340 (QYT29_05320) rplK 1073896..1074318 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QYT29_RS05345 (QYT29_05325) nusG 1074499..1075047 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QYT29_RS05350 (QYT29_05330) secE 1075060..1075242 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QYT29_RS05355 (QYT29_05335) rpmG 1075298..1075441 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QYT29_RS05360 (QYT29_05340) sigH 1075556..1076125 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  QYT29_RS05365 (QYT29_05345) - 1076207..1076731 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QYT29_RS05370 (QYT29_05350) rlmB 1076731..1077477 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QYT29_RS05375 (QYT29_05355) - 1077485..1077889 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  QYT29_RS05380 (QYT29_05360) cysS 1077882..1079282 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  QYT29_RS05385 (QYT29_05365) cysE 1079266..1079913 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=854422 QYT29_RS05360 WP_000872866.1 1075556..1076125(-) (sigH) [Staphylococcus aureus strain 727M]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=854422 QYT29_RS05360 WP_000872866.1 1075556..1076125(-) (sigH) [Staphylococcus aureus strain 727M]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974