Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   QYT29_RS02540 Genome accession   NZ_CP129560
Coordinates   543345..543914 (+) Length   189 a.a.
NCBI ID   WP_000287260.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 727M     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 538345..548914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT29_RS02510 (QYT29_02495) - 539562..539846 (-) 285 WP_000790905.1 lactococcin 972 family bacteriocin -
  QYT29_RS02515 - 540481..540558 (-) 78 WP_099119695.1 putative holin-like toxin -
  QYT29_RS02520 (QYT29_02500) - 540858..541460 (-) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  QYT29_RS02525 (QYT29_02505) - 541475..541651 (-) 177 WP_000214898.1 YkvS family protein -
  QYT29_RS02530 (QYT29_02510) - 541850..542836 (+) 987 WP_000668814.1 lipoate--protein ligase -
  QYT29_RS02535 (QYT29_02515) - 542917..543135 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  QYT29_RS02540 (QYT29_02520) comK/comK1 543345..543914 (+) 570 WP_000287260.1 competence protein ComK Regulator
  QYT29_RS02555 (QYT29_02535) - 544403..545914 (-) 1512 WP_000414168.1 bifunctional metallophosphatase/5'-nucleotidase -
  QYT29_RS02560 (QYT29_02540) - 546053..547411 (-) 1359 WP_000021872.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22624.86 Da        Isoelectric Point: 9.6092

>NTDB_id=854413 QYT29_RS02540 WP_000287260.1 543345..543914(+) (comK/comK1) [Staphylococcus aureus strain 727M]
MYSQNIYVIRKGDMVIRPAFDDDDQRHGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=854413 QYT29_RS02540 WP_000287260.1 543345..543914(+) (comK/comK1) [Staphylococcus aureus strain 727M]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGACA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATCAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995