Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QYT29_RS01380 Genome accession   NZ_CP129560
Coordinates   312697..313569 (-) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 727M     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 307697..318569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT29_RS01370 (QYT29_01360) trmFO 308985..310292 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QYT29_RS01375 (QYT29_01365) topA 310448..312523 (-) 2076 WP_001807811.1 type I DNA topoisomerase -
  QYT29_RS01380 (QYT29_01370) dprA 312697..313569 (-) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  QYT29_RS01385 (QYT29_01375) fmhC 313740..314710 (-) 971 Protein_275 FemA/FemB family glycyltransferase FmhC -
  QYT29_RS01390 (QYT29_01380) - 314812..315759 (+) 948 WP_416471931.1 IS30-like element ISSau1 family transposase -
  QYT29_RS01395 (QYT29_01385) - 315770..316057 (-) 288 Protein_277 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  QYT29_RS01400 (QYT29_01390) - 316085..316237 (-) 153 Protein_278 cell wall hydrolase -
  QYT29_RS01405 - 316241..316297 (-) 57 Protein_279 YSIRK-type signal peptide-containing protein -
  QYT29_RS01410 (QYT29_01395) sucD 316524..317432 (-) 909 WP_000110258.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=854412 QYT29_RS01380 WP_000620182.1 312697..313569(-) (dprA) [Staphylococcus aureus strain 727M]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=854412 QYT29_RS01380 WP_000620182.1 312697..313569(-) (dprA) [Staphylococcus aureus strain 727M]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986