Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYT31_RS05360 Genome accession   NZ_CP129558
Coordinates   1042424..1042819 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 670M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1037424..1047819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT31_RS05335 (QYT31_05330) thiE 1038023..1038664 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  QYT31_RS05340 (QYT31_05335) thiM 1038666..1039457 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  QYT31_RS05345 (QYT31_05340) thiD 1039441..1040271 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYT31_RS05350 (QYT31_05345) tenA 1040264..1040953 (-) 690 WP_000396077.1 thiaminase II -
  QYT31_RS05355 (QYT31_05350) sceD 1041340..1042035 (-) 696 WP_000752004.1 lytic transglycosylase SceD -
  QYT31_RS05360 (QYT31_05355) ssb 1042424..1042819 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QYT31_RS05365 (QYT31_05360) - 1043013..1043453 (+) 441 WP_000846746.1 YwpF-like family protein -
  QYT31_RS05370 (QYT31_05365) fabZ 1043512..1043952 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYT31_RS05375 (QYT31_05370) murA 1043986..1045251 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYT31_RS05380 (QYT31_05375) - 1045362..1045595 (-) 234 WP_064127192.1 DUF1146 family protein -
  QYT31_RS05385 (QYT31_05380) - 1045727..1045819 (-) 93 WP_001790611.1 hypothetical protein -
  QYT31_RS05390 (QYT31_05385) - 1046157..1046561 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=854389 QYT31_RS05360 WP_000932694.1 1042424..1042819(-) (ssb) [Staphylococcus aureus strain 670M]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=854389 QYT31_RS05360 WP_000932694.1 1042424..1042819(-) (ssb) [Staphylococcus aureus strain 670M]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992