Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   QYT28_RS02280 Genome accession   NZ_CP129556
Coordinates   473147..473716 (-) Length   189 a.a.
NCBI ID   WP_123090070.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 137G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 468147..478716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT28_RS02260 (QYT28_02260) - 469650..471008 (+) 1359 WP_000021872.1 TrkH family potassium uptake protein -
  QYT28_RS02265 (QYT28_02265) - 471147..472658 (+) 1512 WP_000414169.1 bifunctional metallophosphatase/5'-nucleotidase -
  QYT28_RS02280 (QYT28_02280) comK/comK1 473147..473716 (-) 570 WP_123090070.1 competence protein ComK Regulator
  QYT28_RS02285 (QYT28_02285) - 473926..474144 (+) 219 WP_000876825.1 IDEAL domain-containing protein -
  QYT28_RS02290 (QYT28_02290) - 474225..475211 (-) 987 WP_000668820.1 lipoate--protein ligase -
  QYT28_RS02295 (QYT28_02295) - 475410..475586 (+) 177 WP_000214898.1 YkvS family protein -
  QYT28_RS02300 (QYT28_02300) - 475601..476203 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  QYT28_RS02305 - 476519..476581 (+) 63 WP_240785570.1 putative holin-like toxin -
  QYT28_RS02310 (QYT28_02305) - 476751..476852 (+) 102 WP_001790623.1 hypothetical protein -
  QYT28_RS02315 (QYT28_02310) - 476862..477134 (+) 273 WP_001794574.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22597.84 Da        Isoelectric Point: 9.6091

>NTDB_id=854290 QYT28_RS02280 WP_123090070.1 473147..473716(-) (comK/comK1) [Staphylococcus aureus strain 137G]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKPRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=854290 QYT28_RS02280 WP_123090070.1 473147..473716(-) (comK/comK1) [Staphylococcus aureus strain 137G]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAACCGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCACCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995