Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QYT28_RS02135 Genome accession   NZ_CP129556
Coordinates   440359..441345 (+) Length   328 a.a.
NCBI ID   WP_416470862.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 137G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 435359..446345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT28_RS02115 (QYT28_02115) - 435796..437442 (+) 1647 WP_038412973.1 IS1182-like element ISSau3 family transposase -
  QYT28_RS02120 (QYT28_02120) trpS 437469..438458 (-) 990 WP_000448933.1 tryptophan--tRNA ligase -
  QYT28_RS02125 (QYT28_02125) spxA 438753..439148 (+) 396 WP_123090067.1 transcriptional regulator SpxA -
  QYT28_RS02130 (QYT28_02130) mecA 439519..440238 (+) 720 WP_001217728.1 adaptor protein MecA -
  QYT28_RS02135 (QYT28_02135) coiA 440359..441345 (+) 987 WP_416470862.1 competence protein CoiA Machinery gene
  QYT28_RS02140 (QYT28_02140) pepF 441393..443201 (+) 1809 WP_000082722.1 oligoendopeptidase F -
  QYT28_RS02145 (QYT28_02145) yjbH 443661..444467 (-) 807 WP_000896691.1 protease adaptor protein YjbH -
  QYT28_RS02150 (QYT28_02150) - 444490..444855 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  QYT28_RS02155 (QYT28_02155) - 444959..445552 (-) 594 WP_000224620.1 CYTH domain-containing protein -
  QYT28_RS02160 (QYT28_02160) - 445738..446085 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38769.32 Da        Isoelectric Point: 9.6529

>NTDB_id=854289 QYT28_RS02135 WP_416470862.1 440359..441345(+) (coiA) [Staphylococcus aureus strain 137G]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGRSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=854289 QYT28_RS02135 WP_416470862.1 440359..441345(+) (coiA) [Staphylococcus aureus strain 137G]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAGAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.646

100

0.966
  coiA Staphylococcus aureus N315

96.646

100

0.966