Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6774_RS10565 Genome accession   NZ_CP145942
Coordinates   2061573..2062310 (+) Length   245 a.a.
NCBI ID   WP_001518181.1    Uniprot ID   -
Organism   Escherichia coli PA11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2056573..2067310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6774_RS10550 (V6774_10550) clpC 2057027..2059600 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  V6774_RS10555 (V6774_10555) yfiH 2059730..2060461 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  V6774_RS10560 (V6774_10560) rluD 2060458..2061438 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6774_RS10565 (V6774_10565) comL 2061573..2062310 (+) 738 WP_001518181.1 outer membrane protein assembly factor BamD Machinery gene
  V6774_RS10570 (V6774_10570) raiA 2062581..2062922 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V6774_RS10575 (V6774_10575) pheL 2063026..2063073 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V6774_RS10580 (V6774_10580) pheA 2063172..2064332 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  V6774_RS10585 (V6774_10585) tyrA 2064375..2065496 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V6774_RS10590 (V6774_10590) aroF 2065507..2066577 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  V6774_RS10595 (V6774_10595) yfiL 2066787..2067152 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.42 Da        Isoelectric Point: 6.4874

>NTDB_id=854249 V6774_RS10565 WP_001518181.1 2061573..2062310(+) (comL) [Escherichia coli PA11]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWIAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=854249 V6774_RS10565 WP_001518181.1 2061573..2062310(+) (comL) [Escherichia coli PA11]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGATTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.934

99.592

0.388
  comL Neisseria gonorrhoeae MS11

38.115

99.592

0.38