Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QYT32_RS04710 Genome accession   NZ_CP129553
Coordinates   956189..957175 (-) Length   328 a.a.
NCBI ID   WP_416470862.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 704D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951189..962175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT32_RS04685 (QYT32_04675) - 951449..951796 (-) 348 WP_001242102.1 hypothetical protein -
  QYT32_RS04690 (QYT32_04680) - 951982..952575 (+) 594 WP_000224620.1 CYTH domain-containing protein -
  QYT32_RS04695 (QYT32_04685) - 952679..953044 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  QYT32_RS04700 (QYT32_04690) yjbH 953067..953873 (+) 807 WP_000896691.1 protease adaptor protein YjbH -
  QYT32_RS04705 (QYT32_04695) pepF 954333..956141 (-) 1809 WP_000082722.1 oligoendopeptidase F -
  QYT32_RS04710 (QYT32_04700) coiA 956189..957175 (-) 987 WP_416470862.1 competence protein CoiA Machinery gene
  QYT32_RS04715 (QYT32_04705) mecA 957296..958015 (-) 720 WP_001217728.1 adaptor protein MecA -
  QYT32_RS04720 (QYT32_04710) spxA 958386..958781 (-) 396 WP_123090067.1 transcriptional regulator SpxA -
  QYT32_RS04725 (QYT32_04715) trpS 959076..960065 (+) 990 WP_000448933.1 tryptophan--tRNA ligase -
  QYT32_RS04730 (QYT32_04720) - 960092..961738 (-) 1647 WP_038412973.1 IS1182-like element ISSau3 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38769.32 Da        Isoelectric Point: 9.6529

>NTDB_id=854223 QYT32_RS04710 WP_416470862.1 956189..957175(-) (coiA) [Staphylococcus aureus strain 704D]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGRSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=854223 QYT32_RS04710 WP_416470862.1 956189..957175(-) (coiA) [Staphylococcus aureus strain 704D]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAGAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.646

100

0.966
  coiA Staphylococcus aureus N315

96.646

100

0.966