Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   QYC20_RS09510 Genome accession   NZ_CP129542
Coordinates   2093636..2094913 (-) Length   425 a.a.
NCBI ID   WP_056952314.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain LB-1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088636..2099913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC20_RS09505 (QYC20_09505) - 2091888..2093597 (-) 1710 WP_003638962.1 proline--tRNA ligase -
  QYC20_RS09510 (QYC20_09510) eeP 2093636..2094913 (-) 1278 WP_056952314.1 RIP metalloprotease RseP Regulator
  QYC20_RS09515 (QYC20_09515) - 2094950..2095735 (-) 786 WP_050338486.1 phosphatidate cytidylyltransferase -
  QYC20_RS09520 (QYC20_09520) - 2095751..2096530 (-) 780 WP_050338485.1 isoprenyl transferase -
  QYC20_RS09525 (QYC20_09525) frr 2096650..2097213 (-) 564 WP_003638966.1 ribosome recycling factor -
  QYC20_RS09530 (QYC20_09530) pyrH 2097215..2097937 (-) 723 WP_003638967.1 UMP kinase -
  QYC20_RS09535 (QYC20_09535) tsf 2098138..2099016 (-) 879 WP_003638968.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46276.88 Da        Isoelectric Point: 9.9299

>NTDB_id=854190 QYC20_RS09510 WP_056952314.1 2093636..2094913(-) (eeP) [Lactiplantibacillus pentosus strain LB-1]
MIVTIITFIIVFGILVIVHEFGHFYFAKKAGILVREFSVGMGPKAVAFRRNATTYTLRFLPIGGYVRMAGVADDEDEELK
PGTPVSLQIGQDGIVHSINASKKTTLFNGIPLSVTATDLERELWIEGYENGDESEVKRYSVDHDATIIESDGTEVQIAPV
DVQFQSAKLWQRMLTNFAGPMNNFILAIITFAILAFMQGGVTSTTTNVSATTANSVARQAGIQKGDQIVAVNGKKMTSAQ
SISLLIQDSPKQWLRLTIKRDGQTKKITVTPAAKTVSGNRIGQIGVMWATKTDKSFGAKLAYGFTGSWNITKQIFQVLGR
MVTHGFSLNDLGGPVAIFATTSQAAKSGLRTVIYLLAVLSINLGIVNLLPIPALDGGKLLLNIVEGIRGKPLRVETESVI
TLIGFGLLMLLMILVTWNDIQRYFF

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=854190 QYC20_RS09510 WP_056952314.1 2093636..2094913(-) (eeP) [Lactiplantibacillus pentosus strain LB-1]
TTGATCGTTACAATTATTACGTTCATTATCGTTTTCGGAATCTTGGTTATCGTCCATGAATTTGGGCACTTCTATTTTGC
CAAAAAGGCTGGGATTTTGGTGCGTGAATTTTCTGTTGGGATGGGACCCAAGGCAGTTGCGTTTCGGCGGAATGCGACGA
CTTATACGTTACGTTTCTTGCCAATTGGTGGGTACGTGCGGATGGCCGGAGTCGCTGACGATGAAGATGAGGAACTGAAA
CCCGGAACGCCAGTCAGCTTACAGATCGGTCAGGATGGCATCGTCCATTCAATCAATGCTAGTAAGAAGACGACGTTGTT
CAACGGGATTCCGCTATCTGTCACGGCGACCGACTTAGAGCGCGAGCTATGGATCGAAGGCTATGAGAATGGCGACGAGA
GCGAAGTTAAACGTTATTCAGTCGACCACGATGCGACCATTATCGAAAGTGATGGGACTGAGGTGCAGATTGCCCCAGTA
GATGTTCAATTTCAGTCAGCCAAGCTTTGGCAGCGGATGCTGACCAATTTTGCTGGTCCCATGAATAACTTCATCTTAGC
CATCATCACGTTTGCAATCCTGGCGTTCATGCAGGGTGGCGTGACGAGTACGACGACTAATGTTTCGGCGACGACGGCCA
ATTCGGTTGCACGCCAAGCTGGGATTCAAAAAGGTGATCAAATTGTCGCTGTCAATGGTAAAAAGATGACCAGTGCGCAG
TCGATTTCGCTCCTGATTCAAGACAGTCCCAAGCAATGGTTGCGTTTGACGATCAAACGTGATGGTCAAACCAAAAAAAT
TACGGTAACACCAGCTGCTAAGACGGTCTCTGGTAATCGTATCGGCCAAATCGGCGTGATGTGGGCGACGAAGACTGACA
AGAGTTTTGGTGCCAAATTGGCCTATGGGTTTACGGGCTCGTGGAATATCACCAAACAGATTTTTCAGGTCCTCGGCCGG
ATGGTCACGCATGGCTTCAGTTTGAACGATTTAGGTGGCCCGGTCGCTATCTTTGCCACGACCTCGCAAGCGGCTAAATC
AGGTCTGCGAACGGTGATTTATTTGCTGGCAGTCTTGTCGATCAACCTGGGAATTGTCAATTTATTACCAATTCCAGCCC
TCGATGGTGGTAAACTATTATTAAACATTGTTGAAGGCATTCGGGGTAAACCACTACGAGTGGAAACGGAAAGTGTCATT
ACCTTGATTGGTTTTGGCCTCTTGATGTTATTAATGATTTTAGTCACTTGGAATGATATCCAACGATATTTCTTCTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(210-260)

Peptidase family M50 (Peptidase_M50)

(7-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.299

100

0.496
  eeP Streptococcus thermophilus LMD-9

49.065

100

0.494