Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYC20_RS00040 Genome accession   NZ_CP129542
Coordinates   10795..11388 (+) Length   197 a.a.
NCBI ID   WP_050338058.1    Uniprot ID   A0A241RQ54
Organism   Lactiplantibacillus pentosus strain LB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5795..16388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC20_RS00030 (QYC20_00030) gyrA 6681..9290 (+) 2610 WP_082230194.1 DNA gyrase subunit A -
  QYC20_RS00035 (QYC20_00035) rpsF 10459..10758 (+) 300 WP_003637271.1 30S ribosomal protein S6 -
  QYC20_RS00040 (QYC20_00040) ssb 10795..11388 (+) 594 WP_050338058.1 single-stranded DNA-binding protein Machinery gene
  QYC20_RS00045 (QYC20_00045) rpsR 11427..11663 (+) 237 WP_003637273.1 30S ribosomal protein S18 -
  QYC20_RS00050 (QYC20_00050) - 11840..13852 (+) 2013 WP_050338057.1 DHH family phosphoesterase -
  QYC20_RS00055 (QYC20_00055) rplI 13866..14318 (+) 453 WP_050338056.1 50S ribosomal protein L9 -
  QYC20_RS00060 (QYC20_00060) dnaB 14334..15764 (+) 1431 WP_050338055.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21368.79 Da        Isoelectric Point: 4.7453

>NTDB_id=854175 QYC20_RS00040 WP_050338058.1 10795..11388(+) (ssb) [Lactiplantibacillus pentosus strain LB-1]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=854175 QYC20_RS00040 WP_050338058.1 10795..11388(+) (ssb) [Lactiplantibacillus pentosus strain LB-1]
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCTAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241RQ54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.452

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.315

100

0.543