Detailed information NTG0854166

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QYF67_RS22550
• Genome accession: NZ_CP129532
• Coordinates: 4850468..4851337 (+)
• Length: 289 a.a.
• NCBI ID: WP_100782488.1
• Uniprot ID: -
• Organism: Pseudomonas donghuensis strain SVBP6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4845468..4856337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYF67_RS22525 (QYF67_22525)	-	4845755..4846678 (-)	924	WP_100782491.1	hypothetical protein	-
QYF67_RS22530 (QYF67_22530)	-	4847004..4848320 (-)	1317	WP_100782490.1	integrase arm-type DNA-binding domain-containing protein	-
QYF67_RS22540 (QYF67_22540)	-	4848628..4849038 (-)	411	WP_010220625.1	pilin	-
QYF67_RS22545 (QYF67_22545)	pilC	4849257..4850465 (+)	1209	WP_100782489.1	type II secretion system F family protein	Machinery gene
QYF67_RS22550 (QYF67_22550)	pilD	4850468..4851337 (+)	870	WP_100782488.1	A24 family peptidase	Machinery gene
QYF67_RS22555 (QYF67_22555)	coaE	4851337..4851960 (+)	624	WP_010220622.1	dephospho-CoA kinase	-
QYF67_RS22560 (QYF67_22560)	yacG	4851957..4852157 (+)	201	WP_010220621.1	DNA gyrase inhibitor YacG	-
QYF67_RS22565 (QYF67_22565)	-	4852162..4852851 (-)	690	WP_036996886.1	energy-coupling factor ABC transporter permease	-
QYF67_RS22570 (QYF67_22570)	-	4852897..4854114 (-)	1218	WP_100782487.1	MFS transporter	-
QYF67_RS22575 (QYF67_22575)	-	4854144..4854605 (-)	462	WP_145959289.1	hypothetical protein	-
QYF67_RS22580 (QYF67_22580)	-	4854727..4855356 (+)	630	WP_010220617.1	DUF1780 domain-containing protein	-
QYF67_RS22585 (QYF67_22585)	-	4855525..4855698 (+)	174	WP_081492759.1	DUF3094 family protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32080.40 Da
• Isoelectric Point: 8.0399

>NTDB_id=854166 QYF67_RS22550 WP_100782488.1 4850468..4851337(+) (pilD) [Pseudomonas donghuensis strain SVBP6]
MNLLNSLASQPLMYLSIALLLGLIIGSFLNVLVHRLPIMLERQWQAEAREVLELPSEAQAPRFDLLLPPSQCPHCAHRIR
PWENIPVISYLALRGRCSSCQARISPRYPLVELACGALTLFVAWRFGVTGTALALLLLSWGLLAMSMIDIEHHLLPDALV
LPLLWLGLIVNAFEMFVPLEDALWGTVAGYLSLWSVFWLFKMLTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGLIMLRLQRKQASTPIPFGPYLAIAGWIALLWGGQITTSYLKYSGF

Nucleotide

• Length: 870 bp

>NTDB_id=854166 QYF67_RS22550 WP_100782488.1 4850468..4851337(+) (pilD) [Pseudomonas donghuensis strain SVBP6]
ATGAACCTGTTGAACTCCCTGGCCAGCCAGCCACTGATGTACCTGAGCATCGCCCTGTTGCTCGGGCTGATCATCGGCAG
CTTTCTCAATGTGCTGGTGCATCGCCTGCCGATCATGCTCGAACGCCAATGGCAGGCCGAGGCGCGCGAGGTGCTGGAGT
TGCCTAGCGAGGCACAAGCGCCGCGCTTCGACCTGTTGTTGCCGCCGTCGCAGTGCCCGCATTGCGCCCACCGTATTCGC
CCCTGGGAAAACATACCGGTCATTAGTTACCTGGCCTTGCGCGGGCGCTGTTCCAGTTGCCAGGCGCGCATCAGCCCGCG
CTACCCGCTGGTGGAACTCGCCTGCGGGGCGCTGACCCTGTTTGTCGCCTGGCGCTTCGGCGTCACCGGCACCGCCCTGG
CCCTGCTGCTGCTGAGCTGGGGCCTGCTGGCCATGAGCATGATCGACATCGAGCACCATCTGCTGCCCGATGCCCTGGTA
TTGCCGCTGTTGTGGCTGGGGTTGATCGTCAATGCCTTCGAAATGTTCGTGCCGCTGGAAGATGCCCTGTGGGGCACGGT
GGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGTTGTTCAAGATGCTTACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCGATGCTGGGTGCCTGGGGCGGCTGGCAGATCCTGCCACTGACGTTGCTGCTGTCGTCCTTGTTGGGG
GCGGTGATCGGGCTGATTATGCTGCGCCTGCAGCGCAAGCAGGCCAGCACGCCGATCCCCTTTGGTCCCTATCTGGCCAT
CGCGGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGAAATATTCCGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.571	96.886	0.519
pilD	Acinetobacter baumannii D1279779	50.73	94.81	0.481
pilD	Vibrio campbellii strain DS40M4	49.819	95.848	0.478
pilD	Acinetobacter nosocomialis M2	50	94.81	0.474
pilD	Neisseria gonorrhoeae MS11	48.438	88.581	0.429