Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BVAD3_RS01755 Genome accession   NZ_AP024501
Coordinates   330999..331436 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 325999..336436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS01730 (BVAD3_03030) - 327019..328155 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  BVAD3_RS01735 (BVAD3_03040) - 328170..328604 (+) 435 WP_021494203.1 RDD family protein -
  BVAD3_RS01740 (BVAD3_03050) - 328676..328999 (+) 324 WP_007409357.1 YckD family protein -
  BVAD3_RS01745 (BVAD3_03060) - 329103..330539 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  BVAD3_RS01750 (BVAD3_03070) nin/comJ 330580..330978 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  BVAD3_RS01755 (BVAD3_03080) nucA/comI 330999..331436 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BVAD3_RS01760 (BVAD3_03090) hxlB 331767..332324 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  BVAD3_RS01765 (BVAD3_03100) hxlA 332321..332956 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  BVAD3_RS01770 (BVAD3_03110) - 333188..333565 (+) 378 WP_207169049.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=85403 BVAD3_RS01755 WP_003156588.1 330999..331436(-) (nucA/comI) [Bacillus velezensis strain AD-3]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=85403 BVAD3_RS01755 WP_003156588.1 330999..331436(-) (nucA/comI) [Bacillus velezensis strain AD-3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment