Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BVAD3_RS01750 Genome accession   NZ_AP024501
Coordinates   330580..330978 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus velezensis strain AD-3     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 325580..335978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS01725 (BVAD3_03020) - 325752..326954 (+) 1203 WP_014416870.1 GTP-binding protein -
  BVAD3_RS01730 (BVAD3_03030) - 327019..328155 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  BVAD3_RS01735 (BVAD3_03040) - 328170..328604 (+) 435 WP_021494203.1 RDD family protein -
  BVAD3_RS01740 (BVAD3_03050) - 328676..328999 (+) 324 WP_007409357.1 YckD family protein -
  BVAD3_RS01745 (BVAD3_03060) - 329103..330539 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  BVAD3_RS01750 (BVAD3_03070) nin/comJ 330580..330978 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  BVAD3_RS01755 (BVAD3_03080) nucA/comI 330999..331436 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BVAD3_RS01760 (BVAD3_03090) hxlB 331767..332324 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  BVAD3_RS01765 (BVAD3_03100) hxlA 332321..332956 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  BVAD3_RS01770 (BVAD3_03110) - 333188..333565 (+) 378 WP_207169049.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=85402 BVAD3_RS01750 WP_014416873.1 330580..330978(-) (nin/comJ) [Bacillus velezensis strain AD-3]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=85402 BVAD3_RS01750 WP_014416873.1 330580..330978(-) (nin/comJ) [Bacillus velezensis strain AD-3]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment