Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QYM01_RS08390 Genome accession   NZ_CP129527
Coordinates   1757644..1758330 (-) Length   228 a.a.
NCBI ID   WP_012516253.1    Uniprot ID   U5Y8A0
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752644..1763330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS08370 (QYM01_08370) dnaI 1753409..1754317 (-) 909 WP_154299144.1 primosomal protein DnaI -
  QYM01_RS08375 (QYM01_08375) - 1754318..1755481 (-) 1164 WP_301899611.1 helicase loader -
  QYM01_RS08380 (QYM01_08380) nrdR 1755465..1755959 (-) 495 WP_012516251.1 transcriptional regulator NrdR -
  QYM01_RS08385 (QYM01_08385) - 1756150..1757640 (-) 1491 WP_012516252.1 HAMP domain-containing histidine kinase -
  QYM01_RS08390 (QYM01_08390) covR 1757644..1758330 (-) 687 WP_012516253.1 two-component system response regulator CovR Regulator
  QYM01_RS08395 (QYM01_08395) - 1758515..1759048 (-) 534 WP_301899612.1 DUF177 domain-containing protein -
  QYM01_RS08400 (QYM01_08400) htpX 1759336..1760229 (-) 894 WP_012516255.1 zinc metalloprotease HtpX -
  QYM01_RS08405 (QYM01_08405) - 1760261..1760818 (-) 558 WP_012677410.1 LemA family protein -
  QYM01_RS08410 (QYM01_08410) rsmG 1760954..1761667 (+) 714 WP_012516257.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26580.56 Da        Isoelectric Point: 4.6541

>NTDB_id=854010 QYM01_RS08390 WP_012516253.1 1757644..1758330(-) (covR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=854010 QYM01_RS08390 WP_012516253.1 1757644..1758330(-) (covR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGACAAAGAAAATTTTAATTATCGAAGATGAAAAGAATCTTGCAAGATTTGTTTCGCTTGAGCTACAACATGAGGGTTA
CGAGGTGACCGTCGAGGTTAATGGTCGTGAGGGCTTGGAGACAGCCCTAGAGAAGGACTTTGACTTAATCCTTCTTGATT
TGATGCTTCCTGAGATGGACGGATTTGAAGTGACACGTCGCTTGCAAACAGAAAAAACGACTTACATCATGATGATGACT
GCGCGTGACTCTATTATGGACGTTGTAGCCGGCTTGGATCGTGGTGCTGATGATTATATCGTGAAGCCATTTGCCATTGA
GGAATTGCTGGCGCGTATTCGTGCTATCTTCCGTCGTCAGGACATTGAGTCAGAGAAAAAGACTCCTAGTCAAGGCGTTT
ACCGCGACTTAGTCTTAAACCCTCAAAACCGCTCTGTCAATCGCGGTGATGACGAGATTTCACTGACTAAGCGTGAATAT
GACCTGCTTAATATTTTGATGACAAACATGAATCGTGTCATGACTCGTGAGGAGCTCTTGTCTAACGTTTGGAAATATGA
CGAGGCTGTTGAAACTAACGTTGTTGATGTTTATATTCGTTACCTTCGTGGGAAGATCGATATCCCTGGGAAAGAGTCTT
ACATTCAAACTGTTCGTGGAATGGGTTATGTGATTCGCGAGAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5Y8A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.533

100

0.829
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.401

99.561

0.671
  vicR Streptococcus mutans UA159

43.29

100

0.439
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425