Detailed information NTG0853996

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QYM01_RS05520
• Genome accession: NZ_CP129527
• Coordinates: 1148272..1149501 (-)
• Length: 409 a.a.
• NCBI ID: WP_043053130.1
• Uniprot ID: A0A7Z8ZVZ1
• Organism: Streptococcus equi subsp. zooepidemicus strain BJ-1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1143272..1154501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM01_RS05510 (QYM01_05510)	-	1144298..1147300 (-)	3003	WP_301899160.1	leucine-rich repeat domain-containing protein	-
QYM01_RS05515 (QYM01_05515)	yihA	1147663..1148262 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
QYM01_RS05520 (QYM01_05520)	clpX	1148272..1149501 (-)	1230	WP_043053130.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
QYM01_RS05525 (QYM01_05525)	-	1149537..1149707 (-)	171	WP_301899161.1	hypothetical protein	-
QYM01_RS05530 (QYM01_05530)	-	1149727..1150224 (-)	498	WP_196819631.1	dihydrofolate reductase	-
QYM01_RS05535 (QYM01_05535)	-	1150305..1151144 (-)	840	WP_043025902.1	thymidylate synthase	-
QYM01_RS05540 (QYM01_05540)	-	1151329..1152504 (+)	1176	WP_164335492.1	hydroxymethylglutaryl-CoA synthase	-
QYM01_RS05545 (QYM01_05545)	-	1152491..1153774 (+)	1284	WP_301900738.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45157.67 Da
• Isoelectric Point: 4.5698

>NTDB_id=853996 QYM01_RS05520 WP_043053130.1 1148272..1149501(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=853996 QYM01_RS05520 WP_043053130.1 1148272..1149501(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGCAACAATGTCTTTATTTGTAATGAATGCGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTCCTTGATATTTTAAACCAATACGTCATTGGTCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTATAATCATTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGTAAGACCTTTTTAGCCCAGACTCTGGCTAAGA
GCCTTAATGTTCCATTTGCTATTGCTGATGCAACCTCTTTGACTGAAGCAGGTTATGTCGGAGAGGATGTGGAGAATATC
CTTCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAACGTGCAGAGCGTGGCATTATTTATGTTGATGAAATTGATAA
GATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATTGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTAGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCTCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGTGCTCTGGAGGCTATTGCAGGCAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATCGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAG

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

3D structure

• AlphaFold DB: A0A7Z8ZVZ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.102	98.044	0.579