Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   QYM42_RS12020 Genome accession   NZ_CP129526
Coordinates   2392007..2392498 (-) Length   163 a.a.
NCBI ID   WP_251899979.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2387007..2397498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS12020 (QYM42_12020) comX 2392007..2392498 (-) 492 WP_251899979.1 sigma-70 family RNA polymerase sigma factor Regulator
  QYM42_RS12025 (QYM42_12025) ezrA 2392755..2394485 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  QYM42_RS12030 (QYM42_12030) tsf 2394690..2395718 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  QYM42_RS12035 (QYM42_12035) rpsB 2395840..2396607 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19832.68 Da        Isoelectric Point: 5.6118

>NTDB_id=853960 QYM42_RS12020 WP_251899979.1 2392007..2392498(-) (comX) [Lactococcus lactis strain ZZ-2]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQNDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVIFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=853960 QYM42_RS12020 WP_251899979.1 2392007..2392498(-) (comX) [Lactococcus lactis strain ZZ-2]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
ACGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGATCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

75.46

100

0.755