Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V6U69_RS03020 Genome accession   NZ_CP145867
Coordinates   579236..579880 (+) Length   214 a.a.
NCBI ID   WP_002884791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 574236..584880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS03000 (V6U69_03000) stkP/pknB 574603..576474 (+) 1872 WP_410534146.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  V6U69_RS03005 (V6U69_03005) - 576620..577378 (+) 759 WP_410534147.1 potassium channel family protein -
  V6U69_RS03010 (V6U69_03010) liaF 577541..578239 (+) 699 WP_037603001.1 cell wall-active antibiotics response protein LiaF -
  V6U69_RS03015 (V6U69_03015) - 578236..579246 (+) 1011 WP_070576872.1 sensor histidine kinase -
  V6U69_RS03020 (V6U69_03020) vraR 579236..579880 (+) 645 WP_002884791.1 response regulator transcription factor Regulator
  V6U69_RS03035 (V6U69_03035) rimM 580577..581095 (+) 519 WP_049545329.1 ribosome maturation factor RimM -
  V6U69_RS03040 (V6U69_03040) trmD 581085..581804 (+) 720 WP_002886864.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V6U69_RS03045 (V6U69_03045) - 581806..582804 (+) 999 WP_410534148.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23977.31 Da        Isoelectric Point: 4.5814

>NTDB_id=853952 V6U69_RS03020 WP_002884791.1 579236..579880(+) (vraR) [Streptococcus salivarius strain KSS10]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=853952 V6U69_RS03020 WP_002884791.1 579236..579880(+) (vraR) [Streptococcus salivarius strain KSS10]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTCGAAGTCGTTGGAGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCAGATGTCG
TCGTTATGGACCTTGTCATGCCTGAATTAGATGGTGTTCAAGCGACTTTGGAATTGCTCAAAGAATGGCCTGAAGCCAAG
ATTTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTACCCAGTCATTGAAGCTGGTGCTAAAGGCTATATGCTTAA
AACCAGCAGTGCGGCAGAGATTCTCAATAGTATCCGTAAGGTTTACCGTGGTGAAGAAGCTATCGAAACTGAGGTGGACA
ATAAGATTAAATACCATGATAGCCATCCGGACCTACACGATGACTTGACGGCACGTGAACGTGATATCTTGGCCCTTTTG
GCTAAGGGTTATGACAATCAAACCATTGCTAACGAGTTGTTTATTTCACTGAAAACCGTTAAAACTCACGTGTCTAATAT
CCTTGGAAAACTCAATGTTGATGACCGTACTCAGGCTGTGGTTTATGCCTTTAGACATCATTTGGTTTCGCAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379