Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   V6U69_RS01600 Genome accession   NZ_CP145867
Coordinates   295309..298962 (+) Length   1217 a.a.
NCBI ID   WP_410533998.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 290309..303962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS01590 (V6U69_01590) - 290380..291753 (+) 1374 WP_073686189.1 GHKL domain-containing protein -
  V6U69_RS01595 (V6U69_01595) rexB 291999..295319 (+) 3321 WP_410533996.1 ATP-dependent nuclease subunit B Machinery gene
  V6U69_RS01600 (V6U69_01600) rexA 295309..298962 (+) 3654 WP_410533998.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U69_RS01605 (V6U69_01605) - 299314..300045 (-) 732 WP_037611950.1 DUF554 domain-containing protein -
  V6U69_RS01610 (V6U69_01610) - 300319..301050 (+) 732 WP_410534000.1 ABC transporter ATP-binding protein -
  V6U69_RS01615 (V6U69_01615) - 301053..302642 (+) 1590 WP_410534002.1 ABC transporter permease -
  V6U69_RS01620 (V6U69_01620) proB 302762..303565 (+) 804 WP_022495873.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 138206.38 Da        Isoelectric Point: 4.7436

>NTDB_id=853932 V6U69_RS01600 WP_410533998.1 295309..298962(+) (rexA) [Streptococcus salivarius strain KSS10]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYTDLFNDYMQAKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQTDAKPDKAKVELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKESYNKTKNEFVAQLREIDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHPENETEVLIYNSDEASVTPDEEGSDQPISSGE
ISLVIKEIINLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRTINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADEGQFYDKLLVACTKTGLHPEVVTQGLDAKLTLFTETLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRADQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSRDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQAAVNADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTTTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHPSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=853932 V6U69_RS01600 WP_410533998.1 295309..298962(+) (rexA) [Streptococcus salivarius strain KSS10]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAAGCCATTTACAGTAATGGTAGCAATATTCTTGTGTCAGCTTCGGCCGGGTCAGGAAAAA
CTTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCTGCAGGTGAGTTGAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAGTTGGGACAAGTTGAGACGGATGAAGA
GCGTGCCTTTCTTTCAGACCAGATTGCCAAAATTGGGACGGCTGATATTGGAACCATGGATGCCTTCACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGGGTGTCACCTATTTTTCGCATCATGACAGACCCTGCTGAGCAGACGCTTATGAAA
AATGAGGTTTATACCGATCTTTTCAATGATTACATGCAAGCCAAGGATGCCCAGCTTTTCCAAAAATTGGTCCGCAACTT
CGCTGGAAATGGTAAGACTAGTAAGGCCTTCCGTGATCTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAGAATCTCTTAAAAGGGCAGACGGATGCCAAGCCAGACAAGGCTAAAGTTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGATCATCTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTAGCCTTCTGGAGGGAGCCTTGGCCAATGACCAAACCGATATGGAGG
ACTTGCTCAAACAACTCTTGACTCTGTCAGGAGGGACTGGATTGACAAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAATCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGCTGCGTGAGATTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTGCTTGATTTTTCAGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCCTTTGAATTCTCAGATATTGCCCACTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCCAGCTACCGTGACCGTTACCATGAAGTAATGGTAGACGAGTATCAAGACAATAGCCATACTCA
AGAACGCATGTTGGAGCTCCTCTCTAACGGTCACAACCGATTCATGGTGGGAGATATCAAGCAATCCATCTATCGTTTCC
GTCAGGCGGATCCTCAGATTTTTAATGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAACTTCCGTAGCCAATCTGAGGTTCTTGATGCGACCAATGGTGTTTTCAGCCACCTCATGGATCAGGAAATCGG
AGATATCCTCTATGACAAGACGCATATGTTGGTAGCAGGTAGCGAGAAGCAAAAAGAGCCCCATCCTGAAAATGAGACTG
AGGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGACGAGGAAGGTTCTGATCAACCTATCAGTAGTGGTGAG
ATTTCCTTGGTTATCAAAGAAATTATCAACCTTCATAAGCAGGGTGTACGTTTTGAGGACATTACCCTCCTAGCACCGAC
CCGCAATACCTATCTTGACTTGATGGCAAGCTTCGAGGAGCACGGAATTCCTTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGATACCCTTCGTACCATCAATAATCCTCTTAATGACTATGCCCTCGTT
GCCCTCCTTCGTTCACCGATGTTTAATTTCAACGAGGATGATTTGGCTCGTATTGCTGTCCAGGCTGACGAAGGACAATT
CTATGACAAGCTTCTTGTAGCATGCACTAAAACAGGGCTTCATCCGGAAGTTGTCACACAAGGACTTGATGCCAAGTTGA
CTCTTTTCACTGAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTACGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCCGATCAACGTCAGGCTAATCTCTACGCCCTTGCCTT
GCGTGCTAATGCCTATGAAAAGACAGGCTTTAAGGGACTTTCTCGTTTTATCGGTATGATTGACAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCTAAAAATGCCGTTAGCCTCATGACTATTCACAAGTCCAAGGGGCTA
GAATTCAAGTATGTTTTTGTCTTGCAGATGAATCGCAAGTTCATTGGTCACAGTAGGGATGGACTAAGTGGTAAGTATAT
TATCAACCGTGAAAAAGGACTTGGCATTAAGTATCTAGCTGACCTAAAAGATCAGATAAACACCAATTTGCCTAAACTAA
ATGTTGTTCTCGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAGCGCAGGGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACTCGTGCAGAGAAAAAACTCTACCTGGTTGGTAAGGGTAGTAAGGAAAAATTAACCCAGCAATT
TGGCACGGATGTCGAAAATAATCGCCTACCAGTAGCTCTCCGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACCGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACGCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCAGCAGTAAATGCTGATGATTTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCTCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAGCTTTATGCACCAGCAATTGACCTACCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTTATGGATACCGAAGGGGTGGATATTATGGATAAGAAAGAGGAAGTGCAACCTCTT
GAGACTACCACTACCTTTGAGCTTCCAGACTTTGGGCAAAAAACTAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGGTAAGTTGCGTCGTGAAGCACCATTTGCTATGTTGGCAGAAGATCCCGCTAGTAAAGAAGATTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGATTATAAGACGGACCGCTTCACTCATCCTA
GTGAACTTAAGGAACGTTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAGACTTGGAAGTCGTAGAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(478-894)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(28-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1059-1194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.612

100

0.509