Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   V6U69_RS01595 Genome accession   NZ_CP145867
Coordinates   291999..295319 (+) Length   1106 a.a.
NCBI ID   WP_410533996.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 286999..300319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS01580 (V6U69_01580) - 287015..288754 (+) 1740 WP_225745639.1 DUF6287 domain-containing protein -
  V6U69_RS01585 (V6U69_01585) - 289034..290344 (+) 1311 WP_410531648.1 hypothetical protein -
  V6U69_RS01590 (V6U69_01590) - 290380..291753 (+) 1374 WP_073686189.1 GHKL domain-containing protein -
  V6U69_RS01595 (V6U69_01595) rexB 291999..295319 (+) 3321 WP_410533996.1 ATP-dependent nuclease subunit B Machinery gene
  V6U69_RS01600 (V6U69_01600) rexA 295309..298962 (+) 3654 WP_410533998.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U69_RS01605 (V6U69_01605) - 299314..300045 (-) 732 WP_037611950.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126217.75 Da        Isoelectric Point: 4.9109

>NTDB_id=853931 V6U69_RS01595 WP_410533996.1 291999..295319(+) (rexB) [Streptococcus salivarius strain KSS10]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMDDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQAEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTVDEKVTDQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFTQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLAVFLGAVQVPNQM
AALTVKASEAEKEQNKQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDDDLDKETQTFWSVAVRYLRKRLDKEQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLMDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLVQFGLDKLAAQANK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTDAAEIIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMTKDEDKNQMQVAENIIPFLVTNQAVKADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=853931 V6U69_RS01595 WP_410533996.1 291999..295319(+) (rexB) [Streptococcus salivarius strain KSS10]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACTAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCCCCTAATGCCCTATCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CGTCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCTAGGTACTTTATTCTCAATACGAGTAACCCAAAAACGCAG
TTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTCTTGTCACATATGGACGATGATGAGCTCAAGGTTTATGGTCG
TTTACGCAAGGATAGTAACTTTATTAATCAATTGGTGGACCTTTACAAAGAGTTGCAGCAGGCTAATATGACAGTTCTGG
ATTTGCAGCATTTGGATCAGGCGGAGAAACAAGAGGATTTGGTAAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCG
GGAGATTTCGACAATCAATCAAAACTCAGTGCCTTCTTCAAGGAGATTACCTCAGGCCACCTCGATAAGGCCTTGAGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAAGCACTGGTTGCGCTCTTGAATGATAAGTGCC
ACCAGATTGTCATTGGGACTTATGCCAGTCAAAAAGCTTATAAGGCTAACTTTGTTTATGGCAATGTTTATCAGGCCTCA
GTGGATTTTTTGAGGACTTTGGCTCAGACCTATAAGGTGACACCTGACTATGTGACGACAGACAAAGAGGGCAATCCTTC
TTTTGCACGTATTAGTCGCCTTTTGGAGAGCCGTCATGATTTTAGTACGGTGGATGAGAAGGTTACTGATCAAGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCG
GATGGCAAGCGCTACAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAATTATCGTGCCGAGGATTTGCTTAATCTCGTAAAATCAGGTCTCTATGGCGGTTTTACTCAA
GAGGACTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGATATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTTAATGCCTTGCGCTCACAACTGGTAGAGCCTTTGGACAAGTTGCTTA
ACAGTCGCAAACAAAAGGGTTCTAGTCTGCTTAAGAAACTTGCGGTCTTTTTAGGGGCTGTACAAGTGCCAAATCAGATG
GCTGCTTTGACTGTCAAGGCCAGTGAAGCTGAAAAAGAGCAGAATAAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACACTGTCAGTGGATGACTTTTTGTCAATTTTGCGTTCGGGAATGTTGGCTT
GTGATTACCGTACGGTCCCAGCCACTGTTGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACATTCAGCTCCT
TATGTTTTTGCCTTAGGCATGACTCAGTCGCATTTTCCAAAGGTTGGGCAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCATAGGAGTTTGGATATTGTTACGCAGAGTAATAGTCAGCGGGGGCATTTTG
TGGCCATGTCGCTTTTCAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACGCAGGATGAC
ATGTCGGTTTATTTGAAGGAACTTCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTATAAGGACCTCCTATCGACTGTCATTGCCCTTAACAGCAGCCATCTAGATGATGATTTGGATA
AGGAAACGCAGACGTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGAGCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTGGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTAAAATT
ATCAGCTTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCCATCCATCCAGATGCCCGACACCACGGGACTTATTTACACCGTGTCTTTGAGCGTGTGATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATCTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCCG
TTAAAGTTGAGCGTGAGGAAGCCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAATGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTCTACAA
TGGCCTTAGTCCGCAATTGGTGACCTATCTGGAGGCCCTTCGACAAACCTATAAGGTCGATGCTGACCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAACTTAACCTAGTCCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTAATAAG
GAATTGACCTATAAGGGGCTCTTTGTAGCTTCAGAAACAGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGTTAGACTACAATATTAAGCTCTTTACAGATGCTGCTGAGATTATTCGAA
GTGGGAATTTTGCGGTCAATCCTTATACCGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGACAAAAGACGAGGACAAGAACCAGATGCAAGTTGCTGAAAATATCATCCCCTTTCTTGTCACCAATCAAGCTGTAA
AAGCAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.802

98.463

0.431