Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   V6U68_RS08525 Genome accession   NZ_CP145866
Coordinates   1852496..1855816 (-) Length   1106 a.a.
NCBI ID   WP_410531646.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847496..1860816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08515 (V6U68_08495) - 1847770..1848501 (+) 732 WP_014632635.1 DUF554 domain-containing protein -
  V6U68_RS08520 (V6U68_08500) rexA 1848853..1852506 (-) 3654 WP_195519955.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U68_RS08525 (V6U68_08505) rexB 1852496..1855816 (-) 3321 WP_410531646.1 ATP-dependent nuclease subunit B Machinery gene
  V6U68_RS08530 (V6U68_08510) - 1856185..1857434 (+) 1250 Protein_1641 ISL3 family transposase -
  V6U68_RS08535 (V6U68_08515) - 1857480..1858853 (-) 1374 WP_073686189.1 GHKL domain-containing protein -
  V6U68_RS08540 (V6U68_08520) - 1858889..1860199 (-) 1311 WP_410531648.1 hypothetical protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126095.56 Da        Isoelectric Point: 4.9074

>NTDB_id=853882 V6U68_RS08525 WP_410531646.1 1852496..1855816(-) (rexB) [Streptococcus salivarius strain KSS9]
MKLLYTDMSQDLTEILTEQATSYAKKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKIYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQAEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYKANFVYGNVYQAS
VDFLKTLAQTYKVTPDYVTTDKEGNPYFARISRLLESRHDFSTVDEKVTDQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEEAMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFTQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLAVFLGAVQVPNQM
ASLTAKASEAEKEQNEQVWKSFTQLLVQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDDDLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLVQFGLDKLAAQANK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTDAAEIIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMTKDEDKNQMQVAENIIPFLVTNQAVTADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=853882 V6U68_RS08525 WP_410531646.1 1852496..1855816(-) (rexB) [Streptococcus salivarius strain KSS9]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACTGAAATTCTGACGGAGCAGGCGACTAGCTATGCTAAAAAGGG
AAAGAGGGTCTTTTATATTGCTCCTAATGCCCTATCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CGTCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCTAGGTACTTTATTCTTAATACGAGTAACCCGAAAACTCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTCTTGTCACATATGGGCGATGATGAGCTCAAGATTTATGGTCG
TTTACGCAAGGATAGTAACTTTATTAATCAATTGGTGGACCTTTACAAAGAGTTGCAGCAGGCTAATATGACAGTTCTGG
ATTTGCAGCATTTGGATCAGGCGGAGAAACAAGAGGATTTGGTAAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCG
GGAGATTTTGACAATCAATCCAAACTCAGTGCCTTCTTCAAGGAGATTACCTCAGGCCACCTAGATAAGGCCTTGAGTAA
CACGGTTTTGGTCATTGATGGTTTTACGCGTTTCTCAGCTGAGGAGGAAGCACTGGTTGCACTCTTGAATGATAAGTGCC
ACCAGATTGTCATTGGGACCTATGCCAGTCAAAAAGCTTATAAGGCTAACTTTGTTTATGGCAATGTTTATCAGGCTTCA
GTGGATTTTCTGAAGACTTTGGCTCAGACTTATAAGGTGACACCTGACTACGTGACGACAGACAAAGAGGGCAATCCTTA
TTTTGCACGTATTAGTCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGGTAGATGAGAAGGTTACTGATCAAGACAAGC
AAGCCTTGCAGGTCTGGGAAGTAGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTACTGGCG
GATGGCAAGCGCTACAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTTGGTAAGGAAGAAGCCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAATTATCGTGCCGAGGATTTGCTTAATCTCGTAAAATCAGGTCTCTATGGCGGTTTTACTCAA
GAGGACTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGATATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTTAATGCCTTGCGCTCACAACTGGTAGAGCCTTTGGACAAGTTGCTTA
ACAGTCGCAAACAAAAGGGTTCTAGTCTACTTAAGAAACTTGCGGTCTTTTTAGGGGCTGTACAAGTGCCAAATCAGATG
GCTAGTTTGACTGCCAAGGCCAGTGAAGCTGAAAAAGAGCAGAATGAACAGGTCTGGAAGTCTTTCACCCAACTCTTGGT
GCAGGTTGAGACTATTTTTGGAGAAGAAACGCTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTAGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACATTCAGCTCCT
TATGTTTTTGCCTTAGGCATGACTCAGTCGCATTTTCCAAAGGTTGGGCAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCATAGGAGTTTGGATATTGTTACGCAGAGTAATAGTCAGCGGGGGCATTTTG
TGGCCATGTCGCTTTTCAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACGCAGGATGAC
ATGTCGGTTTATTTGAAGGAACTTCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTATAAGGACCTCCTATCGACTGTCATTGCCCTTAACAGCAGCCATCTAGATGATGATTTGGATA
AGGAAACGCAGACGTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGATCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTGGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTAAAATT
ATCAGCTTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCCATCCATCCAGATGCCCGACACCACGGGACTTATTTGCACCGTGTCTTTGAGCGTGTGATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCTTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATCTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCCG
TTAAAGTTGAGCGTGAGGAAGCCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAAATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTCTACAA
TGGCCTCAGTCCGCAATTGGTGACCTACCTGGAGGCCCTTCGACAAACCTATAAGGTCGATGCTGACCAGCTTTTTGGTG
CCATGTATCTCCACATGCAGGATCCACAACTTAACCTAGTCCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTAATAAG
GAATTGACCTATAAGGGGCTCTTTGTAGCTTCAGAAACAGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGTTAGACTACAATATTAAGCTCTTTACAGATGCTGCTGAGATTATTCGAA
GTGGGAATTTTGCGGTCAATCCTTATACCGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGACAAAAGACGAGGACAAGAACCAGATGCAAGTTGCTGAAAATATCATCCCCTTTCTTGTCACCAATCAAGCTGTGA
CAGCAGACAAAAAAGATCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.434

98.463

0.428