Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   V6U68_RS08520 Genome accession   NZ_CP145866
Coordinates   1848853..1852506 (-) Length   1217 a.a.
NCBI ID   WP_195519955.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1843853..1857506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08500 (V6U68_08480) proB 1844249..1845052 (-) 804 WP_410531644.1 glutamate 5-kinase -
  V6U68_RS08505 (V6U68_08485) - 1845172..1846761 (-) 1590 WP_302975977.1 ABC transporter permease -
  V6U68_RS08510 (V6U68_08490) - 1846764..1847495 (-) 732 WP_002891761.1 ABC transporter ATP-binding protein -
  V6U68_RS08515 (V6U68_08495) - 1847770..1848501 (+) 732 WP_014632635.1 DUF554 domain-containing protein -
  V6U68_RS08520 (V6U68_08500) rexA 1848853..1852506 (-) 3654 WP_195519955.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U68_RS08525 (V6U68_08505) rexB 1852496..1855816 (-) 3321 WP_410531646.1 ATP-dependent nuclease subunit B Machinery gene
  V6U68_RS08530 (V6U68_08510) - 1856185..1857434 (+) 1250 Protein_1641 ISL3 family transposase -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138166.48 Da        Isoelectric Point: 4.7767

>NTDB_id=853881 V6U68_RS08520 WP_195519955.1 1848853..1852506(-) (rexA) [Streptococcus salivarius strain KSS9]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVESDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYTDLFNDYMQAKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQTDAKPDKAKVELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREIDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKELHPENETEVLIYNSDEASVTPDEEGSDQPISSGE
ISLVIKEIISLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLVACTKKGLHPEVVTQGLDAKLTLFTETLADWRDYSKWQSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSRDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQAAVNADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTTTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHPSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=853881 V6U68_RS08520 WP_195519955.1 1848853..1852506(-) (rexA) [Streptococcus salivarius strain KSS9]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGTATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTAGCAATATTCTTGTGTCAGCTTCGGCCGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCTGCAGGTGAGTTGAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAGTTGGGACAAGTTGAGTCGGATGAAGA
GCGTGCCTTTCTTTCAGACCAGATTGCCAAAATTGGGACGGCTGATATTGGAACCATGGATGCCTTCACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGGGTGTCACCTATTTTCCGCATCATGACAGACCCTGCTGAGCAGACGCTCATGAAA
AATGAGGTTTATACCGATCTTTTCAATGATTACATGCAAGCCAAGGATGCCCAACTTTTCCAAAAATTGGTCCGCAACTT
CGCTGGAAATGGTAAGACTAGTAAGGCCTTCCGCGATCTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAGAATCTCTTAAAAGGGCAGACGGATGCCAAGCCAGACAAGGCTAAAGTTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCATTCTTAAGAGACCATTTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTAGCCTTCTGGAGGGAGCCTTGGCCAATGACCAAACCGATATGGAGG
ACTTGCTCAAACAACTCTTGACTCTGTCAGGAGGGACTGGCTTGACAAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGTGAGATTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTGCTTGATTTTTCAGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCCTTTGAATTCTCAGATATTGCCCACTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCCAGCTACCGTGACCGTTACCATGAAGTAATGGTAGACGAGTATCAAGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAACGGCCACAACCGATTCATGGTGGGAGATATCAAGCAATCCATCTATCGTTTCC
GTCAGGCGGATCCTCAGATTTTTAATGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAACTTCCGTAGCCAATCTGAGGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGATCAGGAAATCGG
AGATATCCTCTATGACAAGACGCATATGTTGGTAGCAGGTAGCGAGAAGCAAAAAGAGCTCCATCCTGAAAATGAGACTG
AGGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGACGAGGAAGGTTCTGATCAACCTATCAGTAGTGGTGAG
ATTTCCTTGGTTATCAAAGAAATTATCAGTCTTCATAAGCAAGGTGTACGTTTTGAGGACATTACCCTCCTAGCACCAAC
CCGCAACACCTATCTGGACTTGATGGCAAGCTTCGAGGAGCACGGAATTCCTTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCGCTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATTAATAATCCTCTTAATGACTATGCCCTCGTT
GCCCTCCTTCGTTCACCGATGTTTAATTTCAACGAGGATGATTTGGCTCGTATTGCTGTTCAGGCTGACAAGGGGCAATT
CTATGACAAGCTTCTTGTAGCTTGCACTAAAAAAGGGCTTCATCCGGAAGTTGTCACACAAGGACTTGATGCCAAGTTGA
CCCTTTTCACTGAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCAATCGCTCTACGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCTTT
GCGTGCCAATGCCTATGAAAAGACTGGTTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCTAAAAATGCCGTTAGCCTTATGACGATTCACAAGTCCAAGGGGCTA
GAATTCAAGTATGTTTTTGTCTTGCAGATGAATCGCAAGTTCATTGGTCACAGTAGGGATGGACTAAGTGGTAAGTATAT
TATCAACCGTGAAAAAGGACTTGGCATTAAGTACCTAGCTGACCTTAAAGACCAGATAAACACCAATTTGCCCAAGTTAA
ATGTTGTTCTAGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAGCGTCGAGCAAGTATCTCAGAAGAGATGCGTTTG
CTCTATGTTGCAATGACTCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGTAGTAAGGAAAAATTAACCCAGCAATT
TGGCACGGATGTCGAAAATAATCGCCTACCAGTAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACCGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACGCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCAGCAGTAAATGCTGATGATTTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCTCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAGCTTTATGCACCAGCGATTGACCTACCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTTATGGATACCGAAGGGGTGGATATTATGGACAAGAAAGAGGAAGTGCAACCTCTT
GAGACTACCACTACCTTTGAGCTTCCAGACTTTGGGCAAAAAACTAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGGTAAGTTGCGTCGTGAAGCACCATTTGCTATGTTGGCAGAAGATCCCGCTAGTAAAGAAGATTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCATCCTA
GTGAACTTAAGGAACGTTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAGACTTGGAAGTCGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.529

100

0.51