Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   V6U68_RS02440 Genome accession   NZ_CP145866
Coordinates   480793..482778 (+) Length   661 a.a.
NCBI ID   WP_410531847.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 475793..487778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02420 (V6U68_02415) - 476127..476543 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  V6U68_RS02425 (V6U68_02420) ftsW 476803..478083 (+) 1281 WP_037599630.1 cell division peptidoglycan polymerase FtsW -
  V6U68_RS02430 (V6U68_02425) tuf 478320..479516 (+) 1197 WP_002890213.1 elongation factor Tu -
  V6U68_RS02435 (V6U68_02430) tpiA 479771..480529 (+) 759 WP_002890214.1 triose-phosphate isomerase -
  V6U68_RS02440 (V6U68_02435) recP/tkt 480793..482778 (+) 1986 WP_410531847.1 transketolase Machinery gene
  V6U68_RS02450 (V6U68_02445) tmk 483053..483682 (+) 630 WP_347109901.1 dTMP kinase -
  V6U68_RS02455 (V6U68_02450) - 483691..484566 (+) 876 WP_410531848.1 DNA polymerase III subunit delta' -
  V6U68_RS02460 (V6U68_02455) yaaT 484563..485369 (+) 807 WP_347109898.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  V6U68_RS02465 (V6U68_02460) yabA 485356..485676 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  V6U68_RS02470 (V6U68_02465) rsmI 485679..486545 (+) 867 WP_002890224.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V6U68_RS02475 (V6U68_02470) - 486744..486947 (+) 204 Protein_439 ammonia permease -
  V6U68_RS02480 (V6U68_02475) - 487071..487727 (+) 657 WP_060971872.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70834.45 Da        Isoelectric Point: 4.7618

>NTDB_id=853822 V6U68_RS02440 WP_410531847.1 480793..482778(+) (recP/tkt) [Streptococcus salivarius strain KSS9]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
SAYPELAAEYKAAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAETGVNKGAYIISEANGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKILTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=853822 V6U68_RS02440 WP_410531847.1 480793..482778(+) (recP/tkt) [Streptococcus salivarius strain KSS9]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCTGGTCATGGTTCTGCTTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGCTCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGAGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACAGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGCTGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATCGGTCAAGATGGCATTGATCACGCAAAAGGTGTGTACGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTTGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
AGTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGATAACTATGCTGGA
CGTAATATTTGGTTTGGTGTACGTGAGTTTGCTATGGCAGCAGCTATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACACACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACTGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGAGCTTACATCATCTCAGAAGCAAACGGTGATCTTGATGGTATCATCATTGCAACTGGTTCTGAAGTG
AAATTGGCTCTTGATACGCAGGCTGCTCTTGAAGCTGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAACCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTCCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAATACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.687

99.546

0.564