Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QY489_RS23600 Genome accession   NZ_CP129518
Coordinates   5094965..5096302 (+) Length   445 a.a.
NCBI ID   WP_301447420.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TNP004     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5089965..5101302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY489_RS23575 (QY489_23575) pgeF 5090108..5090836 (-) 729 WP_003112833.1 peptidoglycan editing factor PgeF -
  QY489_RS23580 (QY489_23580) rluD 5090833..5091795 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QY489_RS23585 (QY489_23585) - 5091941..5092966 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  QY489_RS23590 (QY489_23590) - 5093123..5093368 (+) 246 WP_003102591.1 PP0621 family protein -
  QY489_RS23595 (QY489_23595) pilS 5093358..5094950 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  QY489_RS23600 (QY489_23600) pilR 5094965..5096302 (+) 1338 WP_301447420.1 two-component system response regulator PilR Regulator
  QY489_RS23605 (QY489_23605) thiO 5096348..5097442 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  QY489_RS23610 (QY489_23610) - 5097577..5098086 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  QY489_RS23615 (QY489_23615) - 5098192..5098698 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QY489_RS23620 (QY489_23620) pilV 5098689..5099246 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QY489_RS23625 (QY489_23625) pilW 5099243..5100067 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QY489_RS23630 (QY489_23630) pilX 5100064..5100651 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49781.07 Da        Isoelectric Point: 5.6424

>NTDB_id=853755 QY489_RS23600 WP_301447420.1 5094965..5096302(+) (pilR) [Pseudomonas aeruginosa strain TNP004]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKDVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=853755 QY489_RS23600 WP_301447420.1 5094965..5096302(+) (pilR) [Pseudomonas aeruginosa strain TNP004]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGACGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384