Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J3989_RS09055 Genome accession   NZ_AP024489
Coordinates   1836187..1836990 (+) Length   267 a.a.
NCBI ID   WP_002217677.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1831187..1841990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS09030 (NMNIID777_16890) lptE 1832048..1832527 (-) 480 WP_002214127.1 LPS assembly lipoprotein LptE -
  J3989_RS09035 (NMNIID777_16900) pgeF 1832579..1833358 (-) 780 WP_002221253.1 peptidoglycan editing factor PgeF -
  J3989_RS09040 - 1833711..1833887 (+) 177 WP_242530714.1 hypothetical protein -
  J3989_RS09045 (NMNIID777_16910) - 1833964..1834911 (+) 948 Protein_1757 bile acid:sodium symporter family protein -
  J3989_RS09050 (NMNIID777_16920) rluD 1835064..1836188 (-) 1125 WP_025458648.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J3989_RS09055 (NMNIID777_16930) comL 1836187..1836990 (+) 804 WP_002217677.1 outer membrane protein assembly factor BamD Machinery gene
  J3989_RS09060 (NMNIID777_16940) comA 1837213..1839432 (-) 2220 WP_207177362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30790.80 Da        Isoelectric Point: 8.9351

>NTDB_id=85364 J3989_RS09055 WP_002217677.1 1836187..1836990(+) (comL) [Neisseria meningitidis strain NIID777]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEISVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=85364 J3989_RS09055 WP_002217677.1 1836187..1836990(+) (comL) [Neisseria meningitidis strain NIID777]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCGCTGAGTGCCTGTGCCACTCAAGGTACGGTAGATAAAGATGC
CCAGATTACCCAAGACTGGAGTGTGGAAAAACTCTATGCCGAAGCCCAGGATGAGCTGAACAGCAGCAATTATACTCGAG
CTGTCAAATTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATATCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment