Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6U66_RS02295 Genome accession   NZ_CP145864
Coordinates   436923..438728 (+) Length   601 a.a.
NCBI ID   WP_014633523.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 431923..443728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS02280 (V6U66_02285) - 432153..433370 (+) 1218 WP_001291569.1 tyrosine-type recombinase/integrase -
  V6U66_RS02285 (V6U66_02290) - 433639..434629 (-) 991 Protein_389 IS3 family transposase -
  V6U66_RS02290 (V6U66_02295) coiA 435953..436912 (+) 960 WP_049529144.1 competence protein CoiA Machinery gene
  V6U66_RS02295 (V6U66_02300) pepF 436923..438728 (+) 1806 WP_014633523.1 oligoendopeptidase F Regulator
  V6U66_RS02300 (V6U66_02305) - 438941..440161 (+) 1221 WP_049529141.1 OFA family MFS transporter -
  V6U66_RS02305 (V6U66_02310) - 440233..440940 (+) 708 WP_014633986.1 O-methyltransferase -
  V6U66_RS02310 (V6U66_02315) - 441002..442144 (+) 1143 WP_002886735.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69068.13 Da        Isoelectric Point: 4.5615

>NTDB_id=853584 V6U66_RS02295 WP_014633523.1 436923..438728(+) (pepF) [Streptococcus salivarius strain KSS7]
MSDNRAHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEVLVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=853584 V6U66_RS02295 WP_014633523.1 436923..438728(+) (pepF) [Streptococcus salivarius strain KSS7]
ATGTCAGACAATCGTGCTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTCTTAGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTGTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTATCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAATTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCATGTTCTTTCTCAAGAAGCTGAGGAGCTCTTGGCAGCAGCT
GGTGATATTTTCAACGGTCCAACGGATACCTTCAATGTCTTAGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACGCATGGTAACTTTATCACTCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACTTATGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTACACCGTTACCTAGATTTGCGTAAGAAGGTCTTGGGAC
TTGATGAGCTTAAGATGTATGACGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCTCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTCCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGGGCTTACTCAGGTGGTGCCTACGATACCAATGCCTTCATGCTTTTGAACT
GGCAAGACACTTTGGACAATCTCTTTACCTTGGTTCACGAAACTGGCCATAGTTTGCATTCAACGTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCAGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAGGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGCTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATCCATGAGGCAGATGCATCTGGTCAAATCTTGACAGCGGACTTC
ATGAATAAGCTTTACGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAGGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGATTTGCTGCGGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAAGAAGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTAGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGTCTTGGTTGAAAAAGGTGTTCACCTTTCGTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.501

100

0.995