Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V6U66_RS02290 Genome accession   NZ_CP145864
Coordinates   435953..436912 (+) Length   319 a.a.
NCBI ID   WP_049529144.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430953..441912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS02270 (V6U66_02275) - 431176..431406 (+) 231 WP_001224508.1 helix-turn-helix domain-containing protein -
  V6U66_RS02275 (V6U66_02280) - 431868..432071 (+) 204 WP_000814510.1 excisionase -
  V6U66_RS02280 (V6U66_02285) - 432153..433370 (+) 1218 WP_001291569.1 tyrosine-type recombinase/integrase -
  V6U66_RS02285 (V6U66_02290) - 433639..434629 (-) 991 Protein_389 IS3 family transposase -
  V6U66_RS02290 (V6U66_02295) coiA 435953..436912 (+) 960 WP_049529144.1 competence protein CoiA Machinery gene
  V6U66_RS02295 (V6U66_02300) pepF 436923..438728 (+) 1806 WP_014633523.1 oligoendopeptidase F Regulator
  V6U66_RS02300 (V6U66_02305) - 438941..440161 (+) 1221 WP_049529141.1 OFA family MFS transporter -
  V6U66_RS02305 (V6U66_02310) - 440233..440940 (+) 708 WP_014633986.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37957.82 Da        Isoelectric Point: 9.2966

>NTDB_id=853583 V6U66_RS02290 WP_049529144.1 435953..436912(+) (coiA) [Streptococcus salivarius strain KSS7]
MLIAKNQEGNLVLALETCLKRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSELGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWSLTENLMTVLRFPYQAEQVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKFFMQYYRKRRFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=853583 V6U66_RS02290 WP_049529144.1 435953..436912(+) (coiA) [Streptococcus salivarius strain KSS7]
ATGTTAATTGCAAAAAATCAGGAGGGAAACCTCGTTTTAGCTCTAGAAACCTGTTTGAAACGTAAGGAATCCTATAGCTG
TCCTGGATGCCAGGGAGTTGTCCTATTGAGGCATGGCCAGGTAATGTGCCCACATTTTGCTCATAAATCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCTCAACATTTATCGCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTCCGAGTTGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGTTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGAGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCCTGGTCGTTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGATTTGAAAAGTTTTTTATGCAATATTATC
GAAAAAGGCGTTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.981

97.492

0.448
  coiA Streptococcus pneumoniae Rx1

45.981

97.492

0.448
  coiA Streptococcus pneumoniae D39

45.981

97.492

0.448
  coiA Streptococcus pneumoniae R6

45.981

97.492

0.448
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Lactococcus lactis subsp. cremoris KW2

36.858

100

0.382