Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   V6U65_RS08455 Genome accession   NZ_CP145863
Coordinates   1849479..1853132 (-) Length   1217 a.a.
NCBI ID   WP_410532356.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1844479..1858132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS08435 (V6U65_08430) proB 1844872..1845675 (-) 804 WP_048790193.1 glutamate 5-kinase -
  V6U65_RS08440 (V6U65_08435) - 1845795..1847384 (-) 1590 WP_410532355.1 ABC transporter permease -
  V6U65_RS08445 (V6U65_08440) - 1847387..1848118 (-) 732 WP_021143650.1 ABC transporter ATP-binding protein -
  V6U65_RS08450 (V6U65_08445) - 1848394..1849125 (+) 732 WP_013991143.1 DUF554 domain-containing protein -
  V6U65_RS08455 (V6U65_08450) rexA 1849479..1853132 (-) 3654 WP_410532356.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U65_RS08460 (V6U65_08455) rexB 1853122..1856442 (-) 3321 WP_410532357.1 ATP-dependent nuclease subunit B Machinery gene
  V6U65_RS08465 (V6U65_08460) - 1856691..1858064 (-) 1374 WP_410532358.1 GHKL domain-containing protein -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138029.08 Da        Isoelectric Point: 4.7023

>NTDB_id=853531 V6U65_RS08455 WP_410532356.1 1849479..1853132(-) (rexA) [Streptococcus salivarius strain KSS6]
MLTKAFLSPTEIKERIDQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKEAQLFQKLVRNFAGNGKTSKAFRDLVYDVYSFSQATAGPEKWLRQNLLKGQAEANPDKAKAELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKKLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREIDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHPENETEVLIYNSDEASVTPDEEGSDQPISSGE
ISLVIKEIISLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADEGQFYDKLLVACTKTGLHPEVVTQGLDAKLTLFTETLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQVNTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQATVDADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETSTSFELPDFGQKTKVTGAAVGSATHELMQRLSLSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTQPGELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKNLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=853531 V6U65_RS08455 WP_410532356.1 1849479..1853132(-) (rexA) [Streptococcus salivarius strain KSS6]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGTATTGACCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTAGTAATATTCTTGTGTCAGCTTCGGCTGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATACTTGATATGATTGGACGTGGCGTTGGCATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCCGCGGGTGAGTTAAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAACTTGGACAAGTTGAGACGGATGAAGA
GCGTGCCTTTCTTTCAGATCAGATTGCCAAGATTGGGACGGCAGATATTGGAACCATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCTTGGGGGTGTCACCTATTTTCCGCATTATGACAGATCCTGCCGAGCAGACACTTATGAAA
AATGAGGTTTATGCTGATCTCTTTAACGATTATATGCAAGGGAAGGAGGCCCAACTTTTCCAAAAATTGGTCCGCAACTT
CGCAGGAAATGGCAAGACTAGTAAGGCTTTTCGTGATTTAGTGTACGATGTCTATAGCTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAAAATCTTTTAAAAGGGCAGGCAGAGGCCAATCCAGACAAGGCTAAAGCTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATCTAGGCCTAGCTCAGCGTGAATTTGCCAA
GGCTAAGTATCTTAATAATGTGTCGGATGCCATTAGCCTTCTTGAAGGAGCCTTGGCCAATGACCAAACGGATATGGAGG
ACTTGCTCAAAAAACTCTTGACTTTGTCAGGAGGTACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTAAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGTGAGATTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATTCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTGCTTGATTTTTCAGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCCTTTGAATTCTCAGATATTGCCCACTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCCAGCTACCGTGACCGTTACCATGAAGTAATGGTAGACGAGTATCAAGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAACGGCCACAACCGATTCATGGTGGGAGATATCAAGCAATCCATCTATCGTTTCC
GTCAGGCGGATCCTCAGATTTTTAATGGCAAGTTCCAGCTTTTCCTTGAAAATCCAGATGCAGGTAAGCTAATTCTCCTT
AAAGAGAACTTCCGTAGCCAATCTGAAGTTCTTGATGCGACCAATGGTGTTTTCAGCCACCTCATGGATCAGGAAATCGG
AGATATCCTCTATGACAAGACACACATGTTGGTAGCAGGTAGCGAGAAGCAAAAAGAGCCCCATCCTGAAAATGAGACTG
AAGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGACGAGGAAGGTTCTGATCAACCTATCAGTAGTGGTGAG
ATTTCCCTGGTTATCAAAGAAATTATCAGTCTTCATAAGCAGGGTGTACGATTTGAGGACATTACCCTCCTAGCACCAAC
CCGCAACACCTATCTGGACTTGATGGCAAGCTTCGAGGAGCACGGAATTCCTTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCGCTAGAAGTTATGATTATGTTGGATACTCTTCGTGCCATCAATAATCCTCTTAATGACTATGCCCTCGTT
GCCCTCCTTCGTTCACCGATGTTTAATTTCAACGAGGATGATTTGGCTCGTATTGCTGTCCAGGCTGACGAAGGACAATT
CTATGACAAGCTTCTTGTAGCATGCACTAAAACAGGGCTTCATCCGGAAGTTGTCACACAAGGACTTGATGCCAAGTTGA
CTCTTTTCACTGAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTATGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAAATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCCAAAAATGCCGTTAGCCTCATGACCATTCACAAGTCCAAGGGACTA
GAGTTCAAGTATGTCTTTGTCTTGCAGATGAATCGCAAGTTTATTGGTCACAGCAAGGACGGTCTAAGTGGCAAGTACAT
CATCAACCGTGAAAAAGGACTAGGCATTAAGTATCTAGCTGACCTCAAAGACCAGGTAAATACCAATTTGCCTAAGTTAA
ATGTTGTTCTCGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAACGCCGAGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACCCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGCAGTAAGGAGAAATTGACCCAGCAATT
TGGCACGGATGTTGAAAATAATCGTTTACCAGTAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACTGCCTTCATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACTCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCAACAGTAGATGCTGATGATCTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAATCAACTTTATGCACCAGCGATTGACCTGCCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTCATGGATACTGAAGGGGTGGATATTATGGACAAGAAAGAGGAGGTACAACCTCTG
GAGACATCCACTAGCTTTGAGCTTCCAGATTTTGGGCAAAAAACGAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGAGTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGAGTATCGGCAG
ATGATCAAGTCAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTTTTTGACACCGAACTTGGAAAGCTCATTCTAGCT
AACCGTGATAAGTTGCGTCGCGAAGCGCCATTTGCCATGTTGGCAGAAGATCCCGCTAGTAAAGAAGACTTTGTCGTCCG
TGGTATTATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACAGACCGCTTCACTCAACCTG
GTGAGCTTAAGGAACGTTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTGGGTGGAAAAAACTTGGAAGTTGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.939

100

0.513