Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QYL88_RS07535 Genome accession   NZ_CP129460
Coordinates   1622286..1623173 (-) Length   295 a.a.
NCBI ID   WP_065354381.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain N9-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1617286..1628173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL88_RS07520 xerC 1617790..1618680 (-) 891 WP_014614086.1 tyrosine recombinase XerC -
  QYL88_RS07525 trmFO 1618801..1620105 (-) 1305 WP_014614087.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QYL88_RS07530 topA 1620133..1622202 (-) 2070 WP_103927007.1 type I DNA topoisomerase -
  QYL88_RS07535 dprA 1622286..1623173 (-) 888 WP_065354381.1 DNA-processing protein DprA Machinery gene
  QYL88_RS07540 sucD 1623408..1624313 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  QYL88_RS07545 sucC 1624335..1625501 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  QYL88_RS07550 - 1625763..1626038 (-) 276 WP_015729039.1 hypothetical protein -
  QYL88_RS07555 - 1626130..1626915 (-) 786 WP_065354382.1 ribonuclease HII -
  QYL88_RS07560 ylqF 1626908..1627780 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33677.21 Da        Isoelectric Point: 8.4682

>NTDB_id=853513 QYL88_RS07535 WP_065354381.1 1622286..1623173(-) (dprA) [Staphylococcus pseudintermedius strain N9-1]
MKQLLLLLLYAGFSTQQIQYYYPKLCTLTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLCEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=853513 QYL88_RS07535 WP_065354381.1 1622286..1623173(-) (dprA) [Staphylococcus pseudintermedius strain N9-1]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATTCAATACTATTACCCTAAACTTTGTAC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCGATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCTCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTATGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.345

98.305

0.495
  dprA Staphylococcus aureus N315

50

98.305

0.492