Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   V6U65_RS02960 Genome accession   NZ_CP145863
Coordinates   587719..588315 (+) Length   198 a.a.
NCBI ID   WP_002889030.1    Uniprot ID   J7THI3
Organism   Streptococcus salivarius strain KSS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 582719..593315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS02940 (V6U65_02940) - 582722..583498 (+) 777 WP_410532761.1 alpha/beta fold hydrolase -
  V6U65_RS02945 (V6U65_02945) - 583648..584502 (+) 855 WP_002889033.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  V6U65_RS02950 (V6U65_02950) - 584506..585342 (+) 837 WP_410532763.1 NAD(P)H-hydrate dehydratase -
  V6U65_RS02955 (V6U65_02955) pbp2b 585464..587578 (+) 2115 WP_410532765.1 penicillin-binding protein PBP2B -
  V6U65_RS02960 (V6U65_02960) recR 587719..588315 (+) 597 WP_002889030.1 recombination mediator RecR Machinery gene
  V6U65_RS02965 (V6U65_02965) licT 588419..589258 (+) 840 WP_173018552.1 BglG family transcription antiterminator LicT -
  V6U65_RS02970 (V6U65_02970) ybeY 589468..589965 (+) 498 WP_002886021.1 rRNA maturation RNase YbeY -
  V6U65_RS02975 (V6U65_02975) - 589946..590350 (+) 405 WP_004182934.1 diacylglycerol kinase family protein -
  V6U65_RS02980 (V6U65_02980) era 590373..591272 (+) 900 WP_013990908.1 GTPase Era -
  V6U65_RS02985 (V6U65_02985) mutM 591317..592138 (+) 822 WP_410532767.1 DNA-formamidopyrimidine glycosylase -
  V6U65_RS02990 (V6U65_02990) coaE 592135..592728 (+) 594 WP_070655011.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21768.93 Da        Isoelectric Point: 4.5326

>NTDB_id=853481 V6U65_RS02960 WP_002889030.1 587719..588315(+) (recR) [Streptococcus salivarius strain KSS6]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCNICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=853481 V6U65_RS02960 WP_002889030.1 587719..588315(+) (recR) [Streptococcus salivarius strain KSS6]
ATGCTTTATCCTACTCCAATTGCGAAGCTGATTGATAGTTTTTCAAAACTCCCTGGAATTGGGGCTAAAACAGCGACACG
CCTAGCTTTTTATACCATTAGTATGTCTGATGAAGATGTCAATGATTTCGCAAAAAACCTCTTGGCAGCAAAACGTGAAT
TGACTTATTGTTCGGTATGTGGTCGTTTGACAGATGACGATCCATGTAACATTTGTACCGATGAAACCAGAGACCGTACT
AAGATTTTGGTTGTTGAAGACTCCAAAGATGTTTCAGCTATGGAAAAGATTCAGGAATACCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATTTCCCCTATGAATGGTGTTGGGCCAGACGATATTAACCTGAAAAGTTTGATTACCCGTCTTATGGACA
GCGAGGTTGACGAGGTTATCATCGCCACTAATGCAACAGCAGATGGTGAGGCAACATCTATGTATATTTCACGTGTCCTT
AAACCTGCAGGAATCAAGGTGACTCGTTTAGCGCGTGGTTTGGCTGTTGGTTCTGACATTGAGTATGCTGATGAAGTGAC
CTTGCTAAGAGCTATCGAAAATCGAACAGAACTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7THI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475