Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QY487_RS14560 Genome accession   NZ_CP129459
Coordinates   2970734..2971378 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SSF6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2965734..2976378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY487_RS14525 (QY487_14525) - 2966919..2967350 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  QY487_RS14530 (QY487_14530) - 2967350..2967691 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  QY487_RS14535 (QY487_14535) - 2967684..2969165 (+) 1482 WP_094247541.1 Na+/H+ antiporter subunit D -
  QY487_RS14540 (QY487_14540) - 2969171..2969647 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  QY487_RS14545 (QY487_14545) - 2969647..2969931 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  QY487_RS14550 (QY487_14550) mnhG 2969915..2970289 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  QY487_RS14555 (QY487_14555) - 2970329..2970712 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  QY487_RS14560 (QY487_14560) comA 2970734..2971378 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  QY487_RS14565 (QY487_14565) comP 2971459..2973762 (-) 2304 WP_220181546.1 histidine kinase Regulator
  QY487_RS14570 (QY487_14570) comX 2973774..2973938 (-) 165 WP_007613432.1 competence pheromone ComX -
  QY487_RS14575 (QY487_14575) - 2973938..2974849 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  QY487_RS14580 (QY487_14580) degQ 2975001..2975141 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  QY487_RS14585 (QY487_14585) - 2975606..2975947 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=853475 QY487_RS14560 WP_003152052.1 2970734..2971378(-) (comA) [Bacillus velezensis strain SSF6]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=853475 QY487_RS14560 WP_003152052.1 2970734..2971378(-) (comA) [Bacillus velezensis strain SSF6]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCACGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864