Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   V6U65_RS02370 Genome accession   NZ_CP145863
Coordinates   464334..466319 (+) Length   661 a.a.
NCBI ID   WP_410532677.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 459334..471319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS02350 (V6U65_02350) - 459665..460081 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  V6U65_RS02355 (V6U65_02355) ftsW 460343..461623 (+) 1281 WP_037620423.1 cell division peptidoglycan polymerase FtsW -
  V6U65_RS02360 (V6U65_02360) tuf 461861..463057 (+) 1197 WP_410532675.1 elongation factor Tu -
  V6U65_RS02365 (V6U65_02365) tpiA 463312..464070 (+) 759 WP_002890214.1 triose-phosphate isomerase -
  V6U65_RS02370 (V6U65_02370) recP/tkt 464334..466319 (+) 1986 WP_410532677.1 transketolase Machinery gene
  V6U65_RS02380 (V6U65_02380) tmk 466609..467238 (+) 630 WP_410532679.1 dTMP kinase -
  V6U65_RS02385 (V6U65_02385) - 467247..468122 (+) 876 WP_410532681.1 DNA polymerase III subunit delta' -
  V6U65_RS02390 (V6U65_02390) yaaT 468119..468925 (+) 807 WP_410532683.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  V6U65_RS02395 (V6U65_02395) yabA 468912..469232 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  V6U65_RS02400 (V6U65_02400) rsmI 469235..470101 (+) 867 WP_002886001.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70905.57 Da        Isoelectric Point: 4.7281

>NTDB_id=853474 V6U65_RS02370 WP_410532677.1 464334..466319(+) (recP/tkt) [Streptococcus salivarius strain KSS6]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKAAFANEPVHVDLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVYVRVVSMPSQNLFDEQDAAYKEEVLPTAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=853474 V6U65_RS02370 WP_410532677.1 464334..466319(+) (recP/tkt) [Streptococcus salivarius strain KSS6]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCACTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCTTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGCTCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTTGGTATGGCCATGGCTG
AAGCGCATTTGGCTGCTAAATTCAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTACATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACAGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGCTGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAGGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATCGGTCAAGATGGCATTGATCACGCAAAAGGTGTTTACGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTCGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTGACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGTCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTTGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACCTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACGCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCGTGGAAACGTGCTTTGGCTGA
AACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGACGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGTGTGTATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAACAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATATGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAGTATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.839

99.546

0.566