Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J3989_RS04495 Genome accession   NZ_AP024489
Coordinates   921562..922026 (+) Length   154 a.a.
NCBI ID   WP_207177180.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 916562..927026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS04495 comE 921562..922026 (+) 465 WP_207177180.1 ComEA family DNA-binding protein Machinery gene
  J3989_RS04500 (NMNIID777_08350) - 921957..922577 (-) 621 WP_002223535.1 HK97 family phage prohead protease -
  J3989_RS04505 (NMNIID777_08360) - 922689..923282 (-) 594 WP_002218492.1 hypothetical protein -
  J3989_RS04510 (NMNIID777_08370) prmB 923427..924326 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  J3989_RS04515 (NMNIID777_08380) - 924607..925344 (+) 738 WP_002223538.1 toxin-antitoxin system YwqK family antitoxin -
  J3989_RS04520 (NMNIID777_08390) - 925470..925742 (+) 273 WP_002218494.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16535.81 Da        Isoelectric Point: 10.9585

>NTDB_id=85347 J3989_RS04495 WP_207177180.1 921562..922026(+) (comE) [Neisseria meningitidis strain NIID777]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=85347 J3989_RS04495 WP_207177180.1 921562..922026(+) (comE) [Neisseria meningitidis strain NIID777]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGTATCGGCCCCGCGGTGCTGGCAAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCCAAAGCCCCCGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment