Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QY487_RS08130 Genome accession   NZ_CP129459
Coordinates   1608347..1609126 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SSF6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603347..1614126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY487_RS08110 (QY487_08110) trmFO 1604034..1605341 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QY487_RS08115 (QY487_08115) xerC 1605411..1606328 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  QY487_RS08120 (QY487_08120) hslV 1606344..1606889 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QY487_RS08125 (QY487_08125) hslU 1606897..1608309 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  QY487_RS08130 (QY487_08130) codY 1608347..1609126 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QY487_RS08135 (QY487_08135) flgB 1609480..1609869 (+) 390 WP_094246939.1 flagellar basal body rod protein FlgB -
  QY487_RS08140 (QY487_08140) flgC 1609869..1610321 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  QY487_RS08145 (QY487_08145) fliE 1610332..1610652 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  QY487_RS08150 (QY487_08150) fliF 1610695..1612305 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  QY487_RS08155 (QY487_08155) fliG 1612318..1613334 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QY487_RS08160 (QY487_08160) fliH 1613327..1614082 (+) 756 WP_094246938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=853448 QY487_RS08130 WP_003154263.1 1608347..1609126(+) (codY) [Bacillus velezensis strain SSF6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=853448 QY487_RS08130 WP_003154263.1 1608347..1609126(+) (codY) [Bacillus velezensis strain SSF6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471