Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V6U64_RS03040 Genome accession   NZ_CP145862
Coordinates   594477..595121 (+) Length   214 a.a.
NCBI ID   WP_002884791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 589477..600121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS03020 (V6U64_03020) stkP/pknB 589842..591713 (+) 1872 WP_410536951.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  V6U64_RS03025 (V6U64_03025) - 591861..592619 (+) 759 WP_410536953.1 potassium channel family protein -
  V6U64_RS03030 (V6U64_03030) liaF 592782..593480 (+) 699 WP_013990238.1 cell wall-active antibiotics response protein LiaF -
  V6U64_RS03035 (V6U64_03035) - 593477..594487 (+) 1011 WP_013990239.1 sensor histidine kinase -
  V6U64_RS03040 (V6U64_03040) vraR 594477..595121 (+) 645 WP_002884791.1 response regulator transcription factor Regulator
  V6U64_RS03055 (V6U64_03055) rimM 595813..596331 (+) 519 WP_002884411.1 ribosome maturation factor RimM -
  V6U64_RS03060 (V6U64_03060) trmD 596321..597040 (+) 720 WP_270306892.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V6U64_RS03065 (V6U64_03065) - 597042..598040 (+) 999 WP_195950543.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23977.31 Da        Isoelectric Point: 4.5814

>NTDB_id=853380 V6U64_RS03040 WP_002884791.1 594477..595121(+) (vraR) [Streptococcus salivarius strain KSS4]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=853380 V6U64_RS03040 WP_002884791.1 594477..595121(+) (vraR) [Streptococcus salivarius strain KSS4]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGACTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTCGTTGGAGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCGGATGTCG
TCGTTATGGACCTTGTTATGCCTGAATTAGATGGTGTTCAAGCGACTTTGGAATTGCTCAAAGAATGGCCTGAAGCCAAG
ATCTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGTGCTAAAGGCTATATGCTTAA
AACCAGCAGTGCGGCAGAGATTCTCAATAGTATCCGTAAGGTTTACCGTGGTGAAGAAGCTATCGAAACTGAGGTGGATA
ATAAGATTAAATACCATGATAGCCATCCGGACCTACACGATGACTTGACGGCACGTGAACGTGATATCTTGGCCCTTTTG
GCTAAAGGGTATGACAATCAAACCATTGCTAATGAGCTATTTATTTCATTGAAAACCGTTAAAACTCACGTGTCTAATAT
CCTTGGAAAACTCAATGTTGATGACCGTACTCAGGCTGTCGTTTATGCCTTTAGACATCATTTGGTTTCGCAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379