Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   J3989_RS02970 Genome accession   NZ_AP024489
Coordinates   595130..595828 (+) Length   232 a.a.
NCBI ID   WP_002228941.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 590130..600828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS02950 (NMNIID777_05440) trpC 591452..592234 (-) 783 WP_207177221.1 indole-3-glycerol phosphate synthase TrpC -
  J3989_RS02955 (NMNIID777_05450) - 592285..593241 (-) 957 WP_002218675.1 YheT family hydrolase -
  J3989_RS02960 (NMNIID777_05460) murJ 593374..594912 (-) 1539 WP_002218676.1 murein biosynthesis integral membrane protein MurJ -
  J3989_RS02965 - 594912..595103 (-) 192 WP_002260368.1 hypothetical protein -
  J3989_RS02970 (NMNIID777_05470) dsbA1 595130..595828 (+) 699 WP_002228941.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  J3989_RS02975 (NMNIID777_05480) amgK 595885..596889 (-) 1005 WP_002218680.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  J3989_RS02980 (NMNIID777_05490) - 596959..599367 (+) 2409 WP_207177224.1 LPS-assembly protein LptD -
  J3989_RS02985 (NMNIID777_05500) - 599472..600650 (+) 1179 WP_207177324.1 peptidylprolyl isomerase -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25287.88 Da        Isoelectric Point: 5.6016

>NTDB_id=85337 J3989_RS02970 WP_002228941.1 595130..595828(+) (dsbA1) [Neisseria meningitidis strain NIID777]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMHTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=85337 J3989_RS02970 WP_002228941.1 595130..595828(+) (dsbA1) [Neisseria meningitidis strain NIID777]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAATTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTCGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGCACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains


Predicted by InterproScan.

(63-211)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991

  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621


Multiple sequence alignment