Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   V6U64_RS01665 Genome accession   NZ_CP145862
Coordinates   307658..310978 (+) Length   1106 a.a.
NCBI ID   WP_410536791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 302658..315978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS01650 (V6U64_01650) - 302672..304411 (+) 1740 WP_410536785.1 DUF6287 domain-containing protein -
  V6U64_RS01655 (V6U64_01655) - 304692..306002 (+) 1311 WP_410536787.1 hypothetical protein -
  V6U64_RS01660 (V6U64_01660) - 306036..307409 (+) 1374 WP_410536789.1 GHKL domain-containing protein -
  V6U64_RS01665 (V6U64_01665) rexB 307658..310978 (+) 3321 WP_410536791.1 ATP-dependent nuclease subunit B Machinery gene
  V6U64_RS01670 (V6U64_01670) rexA 310968..314621 (+) 3654 WP_410536793.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U64_RS01675 (V6U64_01675) - 314976..315707 (-) 732 WP_410536795.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126079.57 Da        Isoelectric Point: 4.9352

>NTDB_id=853358 V6U64_RS01665 WP_410536791.1 307658..310978(+) (rexB) [Streptococcus salivarius strain KSS4]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLLRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTLDEQLTTQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLSLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSP
ENFDDKLEKAIAQTNQEQPFELLYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTSAAEVIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSRGKKEAYLELMAKDEDKNQMQVAEKIIPFPVTDQAVKADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=853358 V6U64_RS01665 WP_410536791.1 307658..310978(+) (rexB) [Streptococcus salivarius strain KSS4]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCCAAAACGCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGCGATGATGAGCTCAAGGTTTATGGCCG
TTTGCGCAAGGATAGTAACTTTATTAATCAATTGGTAGACCTTTACAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGCTCAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTTAGTGCCTTCTTCAAGGAAATTACCTCAGGACATCTGGATAAGGCACTGGGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAGGCCCTAGTTGCTCTCTTGAATGATAAGTGCC
ACCAGATTGTCATTGGGACTTATGCCAGTCAAAAAGCTTATAAGGCTAACTTTGTTTATGGCAATGTTTATCAGGCATCA
GTGGATTTTTTGAGAACTTTGGCTCAGACCTATAAGGTGACACCCGACTATGTAACGACAGACAAAGAGGGCAATCCTTC
TTTTGCGCGCATTAGCCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGTTAGACGAGCAGCTGACTACTCAAGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAGGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCA
GATGGTAAGCGCTACAAGGATATTCTGGTCTTACTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGGCAGATTTTCCG
AAAATTTGATATCCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGTCATCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAGCGCTATAATTATCGTGCCGAGGATTTGCTTAATCTCGTAAAATCCGGTCTCTATGGCGGTTTTGCTCAA
GAGGATTTAGATCTTTTTGAGTATTATGTCAATTTTGCAGACATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTTAATGCCTTGCGCTCACAACTGGTAGAGCCCTTGGACAAGTTGCTTA
ATAGTCGCAAACAAAAGGGTTCTAGTCTACTCAAGAAACTAGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGCCAAATG
GCTAGTTTGACTGCCAAGGCCAGTGAGGCGGAAAAAGAACAGAACGAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACACTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCAGGAATGTTGGCCT
GTGATTACCGTACGGTCCCAGCCACTGTCGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACATTCTGCTCCT
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCAAAAGTAGGTCAAAATAAGAGTCTCCTGTCTGATGAGGAACG
TAGTCGTATCAATGAGGCGACGGATGAACACAGGAGTTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTTG
TAGCTATGTCACTTTTTAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACTCAAGATGAC
ATGTCGGTTTATTTGAAAGAGCTGCTTGACCTTGGACTTTCTTTGGTTGAAAAGGGACGTAATCGTTTTGAGGCTAAGGG
GGACCAGATTGGGAACTACAAGGACCTTCTATCAACTGTCATTGCCCTTAACAGCAGTCATCTAGATGCTGATTTGGATA
AGGAAACGCAGACTTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTTGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTGAAATT
ATCAGCCTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTAGGGCTTGAAGAGTTGG
AGTCCATCCATCCAGATGCTCGACACCACGGGACTTACTTGCACCGTGTCTTTGAGCGTGTTATGGGGGATTCTTCGCCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAACTTCTCTATACAGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATTTTAGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCTG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGATTTGCTCTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAGTCAGGTAAAAATGTCTTTGACATTCAAAAATTCTACAA
TGGCCTCAGCCCACAGTTGGTAACCTATCTGGAAGCCCTCCGCCAGACCTATAAGGTTGATGCTGATCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAGCTTAACCTAGCTCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTAACCTATAAGGGACTTTTTGTGGCTTCAGAAACAGAGCATCTAGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGCTCGATTACAATATTAAGCTCTTTACAAGTGCTGCTGAAGTTATTAGAA
GCGGGAATTTTGCGGTCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGAAAGCTCCTGCGTTTACCAAGTAGGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGACAAGAATCAGATGCAAGTTGCTGAAAAAATCATCCCCTTTCCAGTCACTGATCAAGCTGTAA
AAGCAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.893

98.463

0.432